BtaINT0164773 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021023 | ZMYM4
Description
zinc finger, MYM-type 4 [Source:HGNC Symbol;Acc:HGNC:13055]
Coordinates
chr3:110964076-110965306:-
Coord C1 exon
chr3:110965269-110965306
Coord A exon
chr3:110964221-110965268
Coord C2 exon
chr3:110964076-110964220
Length
1048 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGT
5' ss Score
9.11
3' ss Seq
CTGATGTATTTTTTTACTAGGCA
3' ss Score
7.5
Exon sequences
Seq C1 exon
GTGCAGTTCCAACAGTAACAGCAAAAATCATTGGGGAT
Seq A exon
GTAAGTTTTATTATTTTTATTGTTATTGCTACTGTCTTTTCCATCTTATGCAGAATGAATATGTCTAAGCTGATTTGCCCTTATTCATTTTTTATTTATTATATAAAATAAATTTCATGAGTTCATTTAATCTTGTTCAGGAACAGGATTTCCTGGTTATTTAACTAGGTCTTTTATGGACTTCAGTTTTTTTGAATGCTTTATATAGTTACTGAAAATTTTTGTTTTAATTGTATAGAATTAAATCTTATAGCATTTAGGCATACAAGGATTTGGGGCATTTTGTAATGTAGTCAGATTGTAGATGAAGTATTTGTAGAAAGTAGCTTGTTTCCCATTCAGTGAAGATTATGCTATAAATAAGCATTCTTTTTTTTTTTTTAAGCTAAATATTTTTGTCTCTTAAGGACAAAATCAATAATGAGAAAAACTTAGGACTAGAACAGTGGCATTTCTAAAGTCTTTCCTAGTTTCTGGGACAATTATCATATCATCTTTTCTCAAGTTACTTATAGGATCATGAGTGATATTATTATTTCTAGTTACCTTGAAACTGGTTCTTCTAAGATTTAACCCAGTCAAGAAAAAACAGTTCTGATTTTAAGCTCAACCATCATTGTTACTGATCAACAATATTTCATTAATACAAATGGTATTTTTCTTGGTTAATAGAACTGGTAATTAGATACATTCAGAGTTAATATGTAGTTATCAAGGTATTCCTTTATTGCTGTTGATATTTTAGGAATTTTGTATTTCTTACATATTTAATTGAATATTTATATTCTGTGTCTTCCATGTGATTCCATTATAGCATTTCTTTTGAAATTATAATACTTTGAAATGTAACATTATGTAGTGAAGTGTTAGTCGCTCAGTCGTGTCTGACTCTGTGTGACCCCGTGGACTGGGGCTTACCAGGCTCTTCTGTCCATAGGATTCTCCAGGAAAAATTACTGGAGTGGGTGGCCATTTCCTTCTCCAATGATATTATACAATATTTCTCATAATTAGTAAGCTTTTCGTTTCTGATGTATTTTTTTACTAG
Seq C2 exon
GCAAGTACACAAACAGATGTCCTAAAACTGCCACCTTCCCAGCCTCCAAGACTTCTGAAGAATAAAGCTTTATTGTGCAAACCCATCACACAGACCAAGGCCACCTCTTGCAAACCACATACACAAAACAAAGAATGCCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021023:ENSBTAT00000027998:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.531
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGTTCCAACAGTAACAGCA
R:
CTGTCTGGCATTCTTTGTTTTGTGT
Band lengths:
182-1230
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]