RnoINT0169164 @ rn6
Intron Retention
Gene
ENSRNOG00000012397 | Zmym4
Description
zinc finger MYM-type containing 4 [Source:RGD Symbol;Acc:1309545]
Coordinates
chr5:144913306-144914400:-
Coord C1 exon
chr5:144914363-144914400
Coord A exon
chr5:144913451-144914362
Coord C2 exon
chr5:144913306-144913450
Length
912 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGT
5' ss Score
9.11
3' ss Seq
TTTTTTTTTTTTAAAACTAGGCA
3' ss Score
8.37
Exon sequences
Seq C1 exon
GTGCAGTTCCAACAGTAACAGCGAAAATCATCGGGGAT
Seq A exon
GTAAGTTAATTTGTGTTACTATATTTTTCATGTGTATGTATTACATATAGGTCTGAGCTAATATACTCTGTTGAGTAGAATTGTTGATGAATACAGTTTCTGTTATCTAATCAGATCTTTTATATACCTTTTTTCTTTGAATGTTTGGTAGGGACCTTTATGTAATTAATGACTGGAGGTTTTAAAGGTAAACATAAAGTAAATGTCCCGAGGCTGGTCATGTGACCTTAGAGGCTGGTCATGTGATCTTAGAGGCTGTTCTGGGGCTAACACCAACACTTAGGCCTCCTCACTCTCATTCCATGCTCGTCATTCTACATATAATTTTTTTTTCCACTCGATAATGTCTATGTTGTCTCTTAAATGAAGAATAAAGAGAGAAAATAATGAACAAAGCATATTCTGAAACAGTGATATTTCCTGAAAATGTTCCTAGCCTCTGGAATAATTTTTATGTCTGAGTTACTTTTTAATTTTTTTTGATGGTGGCAAACTCTGTGTCCCTGAACTGTAGTTTCAGCATTTCAAGTTACTTTGGGTGGTCATAAGTGATTCCATTAATGTTGGTTACATCCTCTAAGACTGTGTTAGCCTCTAAGTCATCAGGAAGTAACAGATATCATTTAAAATTCCCCATTGTACTGATTATCGGTGTTTTATAATAAGCTTATTGGTATTTTTCTTGATAAGCAAATATAGTAAGTACATTCAGTCAGTTGATAGTTATTAAAATATTCTTTGGTTACTTTCAATATTTGAGGCATATGACATATCTGGTTTATTTATTAGCATATTTTCATGTTGGTTCTATGTAATTCCAATGATATGTCTTTTAAAGTTGAAATTTTTATAATTATTCAAAACATTTTGAAAATCCTTTGGTTTCTGATTTTTTTTTTTTTTTAAAACTAG
Seq C2 exon
GCAAGTACTCAAACAGATGCCCTGAAACTTCCACCTTCCCAGCCTCCAAGGCTTTTGAAGAACAAAGCTTTATTGTGCAAACCCATCACACAGACTAAAGCCACCTCATGCAAACCACATACTCAAAACAAAGAATGCCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012397:ENSRNOT00000016992:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.531
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCAGTTCCAACAGTAACAGC
R:
TGTCTGGCATTCTTTGTTTTGAGT
Band lengths:
182-1094
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]