MmuINT1035865 @ mm10
Intron Retention
Gene
ENSMUSG00000043872 | Zmym1
Description
zinc finger, MYM domain containing 1 [Source:MGI Symbol;Acc:MGI:1915560]
Coordinates
chr4:127047094-127050601:-
Coord C1 exon
chr4:127050564-127050601
Coord A exon
chr4:127049907-127050563
Coord C2 exon
chr4:127047094-127049906
Length
657 bp
Sequences
Splice sites
5' ss Seq
AGCGTAAGT
5' ss Score
10.07
3' ss Seq
ATTTTACCATTTGTCCTAAGAAC
3' ss Score
5.05
Exon sequences
Seq C1 exon
GTACACTTTCTTCTCTACCGACAGATGTCATCATGAGC
Seq A exon
GTAAGTTTTATCCTGATTTTTAAAATTAATTAATTTATTTATATGCGTACACCATAGCTGACATCAGACACCCTAGAAGAGGGCATTAGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCTCTGATTGACCTTTTGTGGGTTTTTGTTGTTGTTGTTGTTTGTTTGTTTGTTTGTTTGTTGGGTTTTTGTTTTGTTTTGTTTTGTTTTCGAGACGGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTTGAACTCACAGAAATCCACCTGCCTCTGCCTCTAGAGTGCTAGGACTAAAGGTGCATGCCACCACGCCCAGCTTCCTTTTGAGTGAATAGTTCTAATCATCTGAGTAATAAAAATATTTCTCTGCTGTTATATACCTAGAGCTCCTTTAAACACTGAATGCTGAATTTAGATGGCAAATAATTATGTTAGTGCTGCTTATAGAGAATCCTATACTATAACTTGTTCATTTTACTGTGTTATTGCAATGGATATGTTTTGATATTTTTATTATTTGAAAACTGCTTAAACAAGTATTATTTTACCATTTGTCCTAAG
Seq C2 exon
AACTCAGCCAGTGAGTCCAGCAGTGGTGTTGGTAATAGTGCGGACCAGCCAGGCCTCCTCCCACCTTGCTCGGTGCTCTGTGAGGACACAGCTGCTCCCGGTGAGGGAGTAGAGAACAACAGTGAGAAATCCATGGAAGGAAATGATAGGCTGTGTCTCTCAAAGTCCACATTAACAGAACAGAACATTAAGACAGAGCCTCCGGGAGAGCCCTGGAGCCCAGCTCTCCAGCATCTGCATCCCAGCCCTGCAGACAATATCGCATTCTGCTATTCTTGCTACTTGTTCTTCCAGAAAAAATTTAGCTGTCGGAGAGAAGCTTTTGCAACCCAAGGAACTGCTGACTGGGAGAAAATGCTGGGAAATTTCAGAAAGCATGAAGAAAGTGACGTGCACTTAAAGTCACTGCAATTTTGGAGGCAATACCAGTTTCTCGATGCTATTCCGTGTGACAATTCATCTGTTTATTCAAAACAGATTGAAGGAAATAAAAAGTACCTAAGGCTCATCATTGAGAACATTTTATTTCTTGGAAAACAGTGCTTGCTGTTAAAAGGAAATGACCAGTCTGTTTCACCCATGAATAAAGGCAGTTTTTTGGAATTGCTAGAACTTAGAGCAAGAGATAGAGGAGAGGTATTTCAGCTCATGAGTTCCCACGTGGACTTCTATAGCAGCACGCTTGTCCAGGAGGAGATTATTGAAATGATAAAGGATGAAATGTTGCAAGACATCGTGAGTGAGATCAACGCCTCCTCAGCCTTTTCAATAATCTGCGAGGAGATAGCTGGTAGTGCCGCTGAGAGACAGCTTTCCGTGTGTGTGAGGTACCCACAAAAGACGCCAAGTGCTGTCTTGGTTAAGGAAAGGTTCCTGGGGTTTGTGACTGCCGAGGAGGTGACTGGGGTCCACGTGCATGGGCGGATCAAAGCTTACCTGCAGCAGGTTGGAGTTGATTTTAATAAAATATGTGGCCAAGCCTATGATAGTGCCACAAATTTTACGGTAAAATTGAATGAAGTTGTAGCAGAATTCAAGAAGGAAGAGCCAAGAGCTCTCTATGTGCATTGTCACGCCCATTTTTTGGAGTTAGCGGTGATTAGCTTCTGTAAGGAGGTGAAGGAGCTCCGCGAGGCACTACACACTCTCTGCTCTTTGTTCAACACAGTTCATGTGTCTGAAGAAATGTTGGCAAGTTTGCAAACCATGTGTAAGCTAAGTCTAAATAAAACTTGTAAGAAACACACGTCACAGTCGTGTTGGCCAGCCCACGACCATTTGCTGCTGGCCGTGACGGACTGCCTTCCGGAGGTCGTTGAGGTGCTGGCGTCAGTGTCACGCCGGTGCGCAGGCACAGCTGTGGCTGCCGAGCTGGAGGACCTGTTGGCCATGGTTACCAAGTTTGAATTTATATTTTGTTTGAAATTTCTTTATCGAGTACTCAGTATCACAGGGATTCTTTCTAGAGAGTTTCAAAGTGAAACTGTTGACATCTTTTCTTTGTTTTCAAAAATAGAAGCAATTTTGGAATGTTTATCTTCTGAAAGGAATGATACATACTTTAAAAATATCTGGGATGGAGCAGATGAAATATGTAAAAAGATAACCAGTAAGGGTTTTGATGTTGAGAAACCCTCTTTTCAAAAAAGAAGAAAAGTTCAAAGAACAGTAGATCCTGGCAACTCAGAGCATATGTTTTTTCCTACTTCAGCAGATGAACAATATAAATTTAATATTTACTACCAAGGTCTGGACACGGTATTAAAACATTTAAAGTTATATTTTTCAGAGTTTGACTATTGTAAAATGAAACAAATTTCAGAGCTGTTACTTAAGTGGAATGAGCCATTAAATGAAGCAACAGCCAAGCACATCCAGGAATTCTATAAGCTTGATGCAGACATCATTCCCGAGCTCCGATTTTACCGGCAGTATGCAGGTTTCAACTTCATCGCAGAGGATGGGTCCTTAAGCTTCATTGACCTAGGCTCTTTGTTTATTCAGCATGCTCTCCACAATAATATTCCTTGTATCACGAAGCTGTTGCATATTGCTTTATCTTGGCCAATTACTTCAGCAAATAATGAGAAGTCATTTTCCACGCTGTCTCATCTTAAAACATACTTACTTCGTACCATGGGACAAGAGAAACTTAGTAGCCTGGCTCTGATAGCTGTTGAGCAGGAACTGGTAAATAAACTGATGGAACCTGAAAGACTGGGGGGAATTGTCGAAAAGTTCATTAGTCAAATGAAAGATACGTGAGACAAACTTGCAACTTTGAGCTTAATTAAAAGAATTCTGTGGTTTTATTAGAATCCTAATGAAGTTTTGTTTGTTGGAGGTTCTTTGAGACAGATAGGGATCTTGCTCTGTAGCCTAGGCTAGTCTTGAATTTGTAAGCTCTTGAGACTGATTGACCCTCTTACCTGACTCTTCTCCTTTAAAGTATTCCAGTTGACGTATTGTGTCGTAGGCACATCTACATTTAATACATTTACTGAGCAACTACTATATGCCAGATAGTATGATATGTGCTGGAGGTATAGCAGAGAATTAGGAGCCTAGAGTCAATTGAACATAGTTTTTTCTAATATAGAAATCTAGTAAGCCTGGCACAGCGGCACACTTTCCTCCAGGACTGTGACTCATTGGTAACATACTTAACGTCCCTAGAATGCATAAGGCCCAGATTCAATTCCCAGTGCCAAGGAAGTCCTGTAATACCATCATAGCTGCTAGTGACCGTGTGCATTGTTAAATAAAATTTTAACTAAAAACCATTGCTGGGAAGAGAATAGTTCTACAGAAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043872:ENSMUST00000106102:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.154 A=NA C2=0.062
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF142911=DUF4371=WD(100=31.1),PF056999=Dimer_Tnp_hAT=WD(100=11.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGACAGATGTCATCATGAGC
R:
TGCAAAAGCTTCTCTCCGACA
Band lengths:
349-1006
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types