HsaINT0186016 @ hg19
Intron Retention
Gene
ENSG00000147130 | ZMYM3
Description
zinc finger, MYM-type 3 [Source:HGNC Symbol;Acc:13054]
Coordinates
chrX:70471408-70473124:-
Coord C1 exon
chrX:70472439-70473124
Coord A exon
chrX:70471452-70472438
Coord C2 exon
chrX:70471408-70471451
Length
987 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
GCCTTCTGCTTCCTTTGCAGGAG
3' ss Score
11.89
Exon sequences
Seq C1 exon
TACATATCCAGCCATACTCATGGACCCCAGTGATTTCCCCAGTCCATTTGACCCATTGACCCTGCCAGAGAAGCCCCTGGCTGGAGACCTACCAGTAGACATGGAATTTGGAGAGGATCTACTGGAATCCCAGACTGCCCCAACTCGAGGATGGGCCCCCCCTGGCCCTTCTCCATCCTCGGGAGCCCTGGACCTGCTTGATACCCCTGCTGGCCTGGAAAAAGACCCTGGAGTCCTGGATGGAGCCACTGAGTTGCTGGGGCTGGGGGGGCTGCTCTATAAAGCCCCCTCTCCCCCGGAGGTGGACCACGGTCCTGAGGGAACCCTGGCATGGGATGCAGGAGATCAGACCCTAGAGCCTGGACCAGGGGGCCAGACCCCTGAGGTGGTACCACCTGATCCAGGGGCTGGGGCAAATTCCTGTTCACCTGAGGGGCTACTAGAGCCTTTGGCTCCAGATTCTCCAATAACACTGCAGTCCCCACATATTGAAGAGGAGGAGACCACCTCCATAGCTACTGCAAGAAGGGGCTCCCCTGGGCAGGAGGAGGAGCTTCCCCAAGGGCAGCCACAGAGCCCAAATGCCCCGCCTAGCCCTTCAGTGGGAGAGACTCTGGGGGATGGAATCAACAGTTCTCAGACCAAACCTGGGGGCTCTAGCCCCCCTGCACATCCTTCCTTGCCAG
Seq A exon
GTAGGTTGCCTAATTATCTGGAGAATCAGGGCTGGGAGAGGGTGGTGGTAAGGAGGGGTGGCTATGTGCTTTGGGAAGTAGTGGGGAGGAGGAGGGTGGAGAGATAAGTGTAGGGATGTGTGTGGGGAAGGACTTGGGGTTTACGAGGGAGGAGTGGGGTGGTGTGTAGAGGAAGATTAAGGAAAGTAGGGGTGGGCACAGGCTGTGGGGGAGGAATGGGGTAAGGTTTCAGGGAGCGTAGGTTGGGAGGAGTGAATTTGGTGGGAAGGGTTCCCTTTTTCCTACCCCAGTGGGCTTTTGGTGCCAGAGTCCTTCCTTCAGGATTTGGGGGAGTACACCAGGCTTCTTGGTTCTAAGACCTTTACAGCTTTTTGGTTCTAGATGGGAGTGGGATTTCTGGGTTTGATGAATGGTAACTAGGTTCTGGAGCCCCTAACAGCATAAGGATTTCAGCAGAGCGATAGAAATGCAGGGTCTAGGATTGCGTCTCTGATAGGGGAGGGACAACCTTGACTTGAGAGGCTCTAGTGTCTCCCCTCTTCTGCCTAGTGGTGTGCCTCTATCAGGCTGTGACGAGGGTCTTAGGGCTTATATAACCACCTGAATCCAGGGGAAGCTACCCATACACTGATGCTTCCTTTTCCTTTTGCTACCTTTGGGTGGTTGTGTGTGTTTTTCATTGGTAAAATATAAATTCTTAATGAAAGGTATATTACCTGTGTTTCCTTAACCCCCAAGGATTGGGACAGAAAGCTGGTGGGAAGGATAGATTTTTTTTTTTTCATGGAATAGCTGCACGTGCACCCCCCCACCCTTAGTACAGAGCCTGAGGTAACCCTGAGAGGGGCCCCAAGAAGCCACAGGCACTCGAGTTTTCCCTTTCAGTTTTGAGTAAGTTCTTCCCCAGGAATGGAGGCGGGGGTTGGGCCGGGGAGAGGGTGGTGAGGGCAGGCTCAACATTTAGGCTGCCTTCTGCTTCCTTTGCAG
Seq C2 exon
GAGATGGCCTGACTGCGAAGGCGAGTGAGAAGCCGCCTGAACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000147130-ZMYM3:NM_001171163:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCTAGAGCCTGGACCAG
R:
CTTCGCAGTCAGGCCATCTC
Band lengths:
358-1345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)