GgaINT0075038 @ galGal3
Intron Retention
Gene
ENSGALG00000005533 | ZMYM3
Description
NA
Coordinates
chr4:2280450-2281639:+
Coord C1 exon
chr4:2280450-2280948
Coord A exon
chr4:2280949-2281598
Coord C2 exon
chr4:2281599-2281639
Length
650 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
CTCCTGTGCTTCTGTTGCAGAAG
3' ss Score
10.06
Exon sequences
Seq C1 exon
GATGGGGAGGGTGGGATGGGGGACTCCTCCACCGTCTCTAAAGAAGCCCTCGTTCCAGAAACACAGAAAGAAGGGGAAGGTGCACCAAAAACTAACTCTGGGGACCTAAAAGAAGATGGTGCTGCTGCTATTCCTGCACTGTCTGATGACAACGGCCCCGAATCACCGCTACAGCCTGCTCCTGACTCTGGAGACCTCAGCAGTGCCCCAGCCACAGAGGAAACCACAGCACAACCCTCGAGTCCGCCAATAGCCCCTCCACAACTCAGCCTTAAACAGTCAAAAAAGACGAGGTTGAAGGCACCGAGGAAAAGCTCACCTGTGCAGAGGGAAGGACTGCCGGGGGATGCAGAGGTGGAGCTGAGCCCAGACAGCAGGATGGCAGCTCTGCCCTCTGAGCCCGCACAGGAAAAGAAAGCAGAGGAATGGAATGCTGATGGGAACAACTCACTGAGAGAAAGCACTGGGCTGAAGGCAGAGGAAGCTGCATTACCAGCAG
Seq A exon
GTAGGTTGCTGTTTCTGCAGGACTTGGCTTCCTCTTGCTCAGGAGGCTGCTTGGCTGCACTCTTCTGAAGTTGGAGGTTGTTCTGAGCTCCATCTTTCCCTGTCTTCCTTTACCTTGGAAATCAGTGATGTTACGGATGGACTAAATATGGGAAAAGTGCCTTGCTTATCTGGGTTAATGTTCTGGAAGCCGTTCCTTTGGTGTGCACAAGCTCTCCCTCCGGTTTTCATAGCTTTAACTTTGATTTTTAGTGCTCGTGTCAGCTAGGAGCTTCCCTGACAAAGCTGCTGCTGCACATCTTTCTCCTCATCCTTGCAGTCTTTGTTGGAGATGATGATTTCCAATATGTGAAGTCCCACCATCCAAGCTGGCCGTCCTCAGGAAGCGCTCCGTCTCCACAGTCATGCAGTTGGAGGCGGGGAGGTCTCTCCTGTACAGGACTTCTCCCAGACCACATGTATTTATCTATACCTACAAGTGGCGGGTTTAGGAGCTTTCCTGTGTCTGAACACCACCAGAATAGCTGGCTCTGTCTGAGGCCATATATGCAGACTGGCCCAAAGGGCGGCTGCATTTGTACACCATCAATCCTCTTCTGTTGGAGAAAAGCAAGATGTCAGATTTAAGTTTCTCCTGTGCTTCTGTTGCAG
Seq C2 exon
AAGGCCTGTCTCGGAAGGGAGGTGTGCCCCAAACTGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005533:ENSGALT00000008873:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTCTGGAGACCTCAGCAGT
R:
CTTCTCAGTTTGGGGCACACC
Band lengths:
357-1007
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]