MmuINT0180493 @ mm9
Intron Retention
Gene
ENSMUSG00000031310 | Zmym3
Description
zinc finger, MYM-type 3 [Source:MGI Symbol;Acc:MGI:1927231]
Coordinates
chrX:98612626-98614291:-
Coord C1 exon
chrX:98613612-98614291
Coord A exon
chrX:98612670-98613611
Coord C2 exon
chrX:98612626-98612669
Length
942 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
CCTTCTTGCTTCCTTTGCAGGAG
3' ss Score
11.87
Exon sequences
Seq C1 exon
CCCATACCCAGCCATGGACCCCAGTGATTTCCCCAGTCCATTTGACCCATTGACCCTGCCAGAGAAGCCCCTGGCTGGAGACCTTCCAGTAGACATGGAATTTGGAGAGGATCTGCTGGAATCTCAGACTGCCCCAAGTCGAGGATGGGCTCCCCCAGGTCCGTCTCCATCCTCTGGAGCCCTGGACCTGCTTGATACCCCTTCTGGCCTGGAGAAGGACCCTGGAGGAGTTCTGGATGGAGCCACTGAGCTACTGGGGCTGGGGGGGCTACTCTATAAAGCCCCTTCTCCCCCAGAGGTGGACCATGGTCCTGAGGGAACCCTTGCATGGGATTCGGGGGAGCAGACCCTAGAGCCTGGACCAGGGTGTCAAACCCCTGAGGTGATGCCACCTGATCCAGGGGCTGGGGCTAGTCCCCCTTCACCTGAGGGGCTACTAGAACCTTTGGCTCCAGATTCTCCAATAATCCTGGAGTCTCCTCATATTGAAGAGGAGATACCCCCCTTAGCTACAAGGAGAAGGGGCTCCCCTGGGCAGGAGGAGGAGCATACCCAAGGGCAGCCACAGAGCCCCAATGCACCCCCTAGCCCTTCAGTGGGAGAGACTCTGGGGGATGGCATCAACAGTTCTCAGAGCAAACCTGGGGTATGTACCCCTACTGCACATCCTTCGTTGCCAG
Seq A exon
GTAGGTCACCTAACCGTTTGGAGGGGCCTGGGGAAAGAAAGGGTGGTGGTCAGGAGGGCTGGCTCTGTGCTTTGAGAAGTGGAGGAGGAGGGGACAGGAGGCTGGGAAGATTAGAGCAGGGCTCTGTGTGCTGAAGGAGGAGTGGGGTGTGGTGAAGATTGTGGAAAACAGGGGTGGGAGGCATGGAGGGGCTGCGCAGGATAAATGGGGTAGTGTGAGGGAATGGATTGGATGGCAGAGGTTCCCTTTCTCATAGCCCCAATGGGTTTCCAGTACCAGGGTCCTTCCTTCAGGGTTTGAAGGAAAATAGCAGGCTTCTAGGCTCTATGATTTTTCCAGCTGTTTGATTCTAAATAGGAGTGGAGTTTCTGGGATTGATGGATGGTAACTCCTCTCTGAAGCCCCCTAACAGCATACCGATTTCAGGGTAATGGTAGAGAGGCAGGATCTAGGATTGCATCTCTGATAGGGGAGGGGCGATCTAGACTTGAAGCTCTAGTTTCTCCCTGAATCTACCTAGTGCTATATCTCCTCTAGCCTGTGATAAGGGTCTTCAGATAGGTAAACTGATATATCTTATATCTCACCAAAGTCCAGAGGGACCTACCCATACATTGATGGGCTTTCCCCTTCTTGCTCCTTTTAAGTGGTTACATTTGTTTTTGTTGGTAAAATATAAATTCTTCATGCACAGTGGGACAGAAATGATTGGAGGGGTAAGAGAATACGTTTTATCTCATGGAGAATAGCTGCACACATACCCTCCCCATTTTCACCATAGTACCAAGTCTGAGGTAACCCTGAAAGGGTTAGAAGCCACAGGCACTCAAGTTTTCCCATTCAGTTTGGAGTAAATTGTTCCCCAGGAATGGAGGTGGGGGCCGGCCCTGGACGGCCCTGGACAGGCTCAAGACTTAGGCTACCTTCTTGCTTCCTTTGCAG
Seq C2 exon
GAGATGGCCTGACTGGGAAGGAGATTGAGAAGCCGCCTGAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031310-Zmym3:NM_001177985:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCTAGAGCCTGGACCAG
R:
CCTTCCCAGTCAGGCCATCTC
Band lengths:
356-1298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: