BtaINT0164754 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008492 | ZMYM3
Description
zinc finger, MYM-type 3 [Source:HGNC Symbol;Acc:HGNC:13054]
Coordinates
chrX:84690522-84692188:+
Coord C1 exon
chrX:84690522-84691207
Coord A exon
chrX:84691208-84692144
Coord C2 exon
chrX:84692145-84692188
Length
937 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
GCTTTCTGCTTCCTTTGCAGGAG
3' ss Score
11.37
Exon sequences
Seq C1 exon
CCCACATCCAGTCATCCTCATGGATCCCAGTGATTTCCCCAGTCCGTTTGACCCATTGACCCTGCCAGAGAAGCCCTTGGCTGGAGACCTTCCAGTAGACATGGAATTTGGAGAGGATCTACTGGAATCTCAGACTGCCCCAACTCGAGGATGGGCCCCCCCTGGCCCTTCTCCATCCTCGGGAGCCCTGGACCTGCTTGATACCCCTGCTGGCCTGGAGAAAGACCCTGGAGTCCTGGATGGAGCCACTGAGCTGCTGGGGCTGGGGGGGCTACTCTATAAAGCCCCCTCTCCCCCAGAGGTGGACCATGGTCCTGAGGGGACCCTTGCATGGGATGCAAGCGATCAGACCCTAGAGCCTGGACCAGGGGGCAGGACCCCTGAGGTGGTGCCACCTGACCCAGGGGCTGGGGCAAATCCCTCTTCACCTGAGGGGCTACTAGAGCCTTTGGCTCCAGATTCTCCAATAACTCTGCAATCCCCACATATTGAAGAGGAGGAGACCACCTCCATAGCTACAGGGAGAAGGGGCTCCCCTGGGCAGGAGGAGGAGCTTCCCCAAGGGCAACCACAGAGCCCAAATGGCCCCCCCAGCCCTTCAGTGGGAGAGACTCTGGGGGATGGAATCAACAGTTCTCAGACCAAACCTGGGAGCCCTAGCCCCCCTGCACACCCTTCCTTGCCAG
Seq A exon
GTAGGTTGCCTGATCAGCTGGAAAATCAAGGCTGGGGGATGGTAAGGAGGTGGCTGTGTGGGGAAGAAGTGGGGGTGGAGAGTAGGGATGTGTATGGAGGAGTTAGGGGTTTGGAAAGAAGGAATAGGGATGTGGTGAAGAAGATGAAGGAAAGTAGGGAGGGAGAAGCTCAGTGGCTCTGGAGGAAAAATAGGGGCAAGGTTTCAGGGGGTGGGTTGAGAAGACTGGATTTTGTGGGAGAGAGTCCCTTTTTCTTCTCCCGGTGGGCTTTTGGTTACCAGGGTCCTTCCTTCAGGACTTGGGGAGGACACCAGGCTTCTTGGTTCTAAGATCTTTCTGTTTTGTTCTAGATGAGAGTGGGGTTTCTGGGTTTGATGAATGATGCTAGGTTCTGGAGCCAAGTGCAGAGTGCTTTCAGAGGAATGGTAGACATGCAGGGCCTAGGATTGTGTCTCTGATAGTCAGAAACTTAAGAGGCTTGCATTTCTTCCCAGTTCTACCTAGCACAGTGCCTCTCCCAGGTTGTGACCAGGGTCTTAGGGCTTATATAACCACCTGAGTCCAGGGGAACCTCCCCATACATTATTGCTTCCTTTTCCCCTTGCTACCTTTGGGTGGTTGCATTTGCTTTTGTTGATAAACTATAAATTCTTGAAAGGGATGTTACCTGTATTTCCTTAACTCCCAACCATTGGGATAGAAAGCTGGTGGGAAGGTAGGATTGTTTTTTCATGGAGAATAGCTGCAGCCCGCCCCCCCCCCCCTTAGTGCAGAGCTCGAGGTAACCCTGAGAGGGGCCTCAAGAAGCCACAGGCACGCGAGTTTTCCCTTTCAGTTTTGAGTAAGTTCTTCCCCAGGAATGGAGGCGGGGGTTGAGCCAGGGAGGGGGTGGTGAGGGCAGGCTCAAGAATTAGGCTGCTTTCTGCTTCCTTTGCAG
Seq C2 exon
GAGATGGCCTGACTGGGAAGGCGAGTGAGAAGCCGCCTGAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008492:ENSBTAT00000011195:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCTAGAGCCTGGACCAG
R:
CTTCCCAGTCAGGCCATCTC
Band lengths:
358-1295
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]