RnoINT0169133 @ rn6
Intron Retention
Gene
ENSRNOG00000003707 | Zmym3
Description
zinc finger MYM-type containing 3 [Source:RGD Symbol;Acc:1564967]
Coordinates
chrX:71311891-71313513:-
Coord C1 exon
chrX:71312844-71313513
Coord A exon
chrX:71311935-71312843
Coord C2 exon
chrX:71311891-71311934
Length
909 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
CCTTCTTGCTTCCTTTGCAGGAG
3' ss Score
11.87
Exon sequences
Seq C1 exon
ATGGACCCCAGTGATTTCCCCAGCCCATTTGACCCATTGACCCTGCCAGAGAAGCCCCTTGCTGGAGACCTTCCAGTAGACATGGAATTTGGAGAGGATCTGCTGGAATCTCAGACTGCCCCAACTCGAGGATGGGCCCCCCCAGGTCCGTCTCCATCCTCTGGAGCCCTGGACCTGCTTGATACCCCTTCTGGCCTGGAGAAGGACCCTGGAGTAGTCCTGGATGGAGCCACTGAGCTACTGGGGCTGGGGGGGCTACTCTATAAAGCCCCTTCTCCCCCAGAGGTGGACCATGGTTCTGAGGGGACCCTTGCATGGGATTCGGGGGAGCAGACCCTAGAGCCTGGACCAGGGTGCCAGACCCCTGAGGTGATGCCACCTGATCCAGGGGCTGGGGCCAGCCCCCCTTCACCTGAAGGGCTACTAGAACCTTTGGCTCCAGATTCTCCAATAATCCTGGAGTCTCCTCATATTGAAGAGGAGGAGATATCCCCCTTAGCTACAAGTAGAAGGGGCTCCCCTGGGCAGGAGGAGGAGCATACCCAAGGGCAGCCACAGAGCCCAAATGCACCCCCTAGCCCTTCAGTGGGAGAGACTCTGGGGGATGGAATCAACAGTTCTCAGACCAAACCTGGGGTATCTAACCCTGCTGCACATCCTTCTTTGCCAG
Seq A exon
GTAGGTTGCCTAATCATTTGGAGGGGGCTGGGGAGAGAAAGGGTGGTGGTAAGGAGGGCTGGCTATGTGCTTTGAGAAGTGGAGGAGGAGGGGGCAGGAGGGTGGAAAGATCAGAGCAGTGCTATGTGTGGTGAAGGAGTTGGGTTTTTGGAAGGAGGAGTGGGGTGTGGTGAAGATTATGGAAAATGGCTGGGAGGAGTGGAGGGGCTGTGCAGGATGAATGGGGTAGTATGAGGGAATGGATTTGATGGCAGGGGTTCCCTTTCTCATAGCCCAGTGGGCTTCAGTGCCAGGGTCCCTCCTTCAGAAATTGAAGGAAAATAGCAGGCTCCTAGGCTCGACGATTTTTCCAGCTGTTTGGTTCTAAATGGGAGTGGAGTTTCTGGGATTGATGAATGGTAACTCCTCTCTGAAGCCCCTAACAGCATACCGATTTCAGGGTAGTGGTAGAGAGGAGGATCCAGGATTGTGTCTCTGGTAGGGGAGGGGCAATCTAGACCTGAAGCTCTAGTTTCTCCCTTAATCTACCTAGTGGTATCCTTCCTCTAGCCTGTAACAAGGGTCTTCAAATATATAAACTGACATATATCACCAAAGTCCAGAGGAACATACCCATACATTGATGGGTTCCCCCCCCCTTCTTGCTCCCTTTAAATGGTTACATTTGTTTTGATTGGTAAAATCTCAATTCTTCATGCACAGTGGGACAGAAATGACTGGAGAATAGCTGCACACACAGCCTCCCCATTTCCCCCGTAATACCAAGTCTGAGGTAGCCCTGAAAGGGTTAGAAGCCACAGGCACTCGAGTTTCCAGTTCAGTTTTGAGTAAATTCTTCCCCAGAAATGGAGGTGGGGGTTGGACCTGGGCAGGCTCAAGATTTAGGCTGCCTTCTTGCTTCCTTTGCAG
Seq C2 exon
GAGATGGCCTGACTGGGAAGGAGATTGAGAAGCCGCCTGAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003707:ENSRNOT00000004972:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.987 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCTAGAGCCTGGACCAG
R:
CTTCCCAGTCAGGCCATCTC
Band lengths:
358-1267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]