HsaINT1047269 @ hg38
Intron Retention
Gene
ENSG00000147130 | ZMYM3
Description
zinc finger MYM-type containing 3 [Source:HGNC Symbol;Acc:HGNC:13054]
Coordinates
chrX:71251558-71253274:-
Coord C1 exon
chrX:71252589-71253274
Coord A exon
chrX:71251602-71252588
Coord C2 exon
chrX:71251558-71251601
Length
987 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
GCCTTCTGCTTCCTTTGCAGGAG
3' ss Score
11.89
Exon sequences
Seq C1 exon
TACATATCCAGCCATACTCATGGACCCCAGTGATTTCCCCAGTCCATTTGACCCATTGACCCTGCCAGAGAAGCCCCTGGCTGGAGACCTACCAGTAGACATGGAATTTGGAGAGGATCTACTGGAATCCCAGACTGCCCCAACTCGAGGATGGGCCCCCCCTGGCCCTTCTCCATCCTCGGGAGCCCTGGACCTGCTTGATACCCCTGCTGGCCTGGAAAAAGACCCTGGAGTCCTGGATGGAGCCACTGAGTTGCTGGGGCTGGGGGGGCTGCTCTATAAAGCCCCCTCTCCCCCGGAGGTGGACCACGGTCCTGAGGGAACCCTGGCATGGGATGCAGGAGATCAGACCCTAGAGCCTGGACCAGGGGGCCAGACCCCTGAGGTGGTACCACCTGATCCAGGGGCTGGGGCAAATTCCTGTTCACCTGAGGGGCTACTAGAGCCTTTGGCTCCAGATTCTCCAATAACACTGCAGTCCCCACATATTGAAGAGGAGGAGACCACCTCCATAGCTACTGCAAGAAGGGGCTCCCCTGGGCAGGAGGAGGAGCTTCCCCAAGGGCAGCCACAGAGCCCAAATGCCCCGCCTAGCCCTTCAGTGGGAGAGACTCTGGGGGATGGAATCAACAGTTCTCAGACCAAACCTGGGGGCTCTAGCCCCCCTGCACATCCTTCCTTGCCAG
Seq A exon
GTAGGTTGCCTAATTATCTGGAGAATCAGGGCTGGGAGAGGGTGGTGGTAAGGAGGGGTGGCTATGTGCTTTGGGAAGTAGTGGGGAGGAGGAGGGTGGAGAGATAAGTGTAGGGATGTGTGTGGGGAAGGACTTGGGGTTTACGAGGGAGGAGTGGGGTGGTGTGTAGAGGAAGATTAAGGAAAGTAGGGGTGGGCACAGGCTGTGGGGGAGGAATGGGGTAAGGTTTCAGGGAGCGTAGGTTGGGAGGAGTGAATTTGGTGGGAAGGGTTCCCTTTTTCCTACCCCAGTGGGCTTTTGGTGCCAGAGTCCTTCCTTCAGGATTTGGGGGAGTACACCAGGCTTCTTGGTTCTAAGACCTTTACAGCTTTTTGGTTCTAGATGGGAGTGGGATTTCTGGGTTTGATGAATGGTAACTAGGTTCTGGAGCCCCTAACAGCATAAGGATTTCAGCAGAGCGATAGAAATGCAGGGTCTAGGATTGCGTCTCTGATAGGGGAGGGACAACCTTGACTTGAGAGGCTCTAGTGTCTCCCCTCTTCTGCCTAGTGGTGTGCCTCTATCAGGCTGTGACGAGGGTCTTAGGGCTTATATAACCACCTGAATCCAGGGGAAGCTACCCATACACTGATGCTTCCTTTTCCTTTTGCTACCTTTGGGTGGTTGTGTGTGTTTTTCATTGGTAAAATATAAATTCTTAATGAAAGGTATATTACCTGTGTTTCCTTAACCCCCAAGGATTGGGACAGAAAGCTGGTGGGAAGGATAGATTTTTTTTTTTTCATGGAATAGCTGCACGTGCACCCCCCCACCCTTAGTACAGAGCCTGAGGTAACCCTGAGAGGGGCCCCAAGAAGCCACAGGCACTCGAGTTTTCCCTTTCAGTTTTGAGTAAGTTCTTCCCCAGGAATGGAGGCGGGGGTTGGGCCGGGGAGAGGGTGGTGAGGGCAGGCTCAACATTTAGGCTGCCTTCTGCTTCCTTTGCAG
Seq C2 exon
GAGATGGCCTGACTGCGAAGGCGAGTGAGAAGCCGCCTGAACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000147130:ENST00000373998:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCTAGAGCCTGGACCAG
R:
CTTCGCAGTCAGGCCATCTC
Band lengths:
358-1345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains