HsaINT0186175 @ hg19
Intron Retention
Gene
ENSG00000164631 | ZNF12
Description
zinc finger protein 12 [Source:HGNC Symbol;Acc:12902]
Coordinates
chr7:6744790-6746566:-
Coord C1 exon
chr7:6746063-6746566
Coord A exon
chr7:6744855-6746062
Coord C2 exon
chr7:6744790-6744854
Length
1208 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
CTTGGGTTTTCCTTCCCCAGATC
3' ss Score
10.48
Exon sequences
Seq C1 exon
TCCTGTGCGTCCCCAGGTCACCGCTCGCCCTAGTTCCCAGGCTTTGGCCTCCGGTGGGCGAGAATCGCGGAGCCTGCGGGGCTGGGCGCCGAAGAGCCGGGCCGGCACCCAAGCGGGCGCGGGGCTGTGCGGGCCAGGCGGAGGCTCAAGCGGGGATCCCCGAGCACGACCCCCGGAGCCGACGGCGCTGGGGCCCAAGGGGCCGGCCGGGCGGTGACGACGGCGGAGGCGAAGGGGCGGCGGGACCCGGGCCCGGCCCGTGTGCGTCCTCGACGGCCCGGCCCCGGCTCCGCAGGACGGTGAGCCCCAGGGAGACGGATCTGGGCTCCGGGAGGGACGCCCCGCCTGGATTTGTCCCGTAGGCCCGGCCCGGGCCCCTCTGGAGCAGAACGGCCTTGGTGAGGTGGACAGGAAGGGACCTCGCGAGCAGACGCGCGCCCGCGACAGCAATCCCGCCCCGGCCTGTCGGGAGCGGTGGGGCAGAGGCTGCGGAGCCCCAGGAGG
Seq A exon
GTAAGTCGTGGGTTTGCGGGCCCGGGGCGAGAAGGGCCTGGGTGAAGTCACCGCGTGTAGGGCACCTTAGAGTGAGGGACAGTGGAAGGTCTCGATCGCTTGCAGGAGTGACGTGTGTTTGGGTTTGAAGGCAGGGTCCGGCGAGGACGAGGCTTACGGGGGCGTGGGGGGTGTCACCAGCCTCAGCTGCGGACGTTGTCTCCACTCCCCCCTCACCCCAGCAGCCCTTCCTCCTCTCTCTGCTCCAGATTGCTACCGTATCTAAACGTCCGTCAGCACCTCTGTTCTCTCATTTAAGTGCTGATTCCCCCTTAGGTCTGCTCTTGTGGAATCATACGTTGTAGTGCAGGAACAGCCTGCAGGAACTATCTCTTGCTGCCTCATTTGCTAGGGGAAGGGCCTTAGCAGGTGGGTGACTTGTCCGAGGTTTTGTGGGTGGAGTTGCTCATAGTAGAACTCTGGAGTTTTATCTCCCAGGCCAGTGTTCTGTCCCCCGTATCCTAGTTAAGTGAGCGTAAGTTCTTCAATAAAAGATCCTTTTGAGTAGCACACTGAAGTTTCTGCAAATAAAGACTCAATTATGCCGACTGTATTCCTTTATTTAGGGCATCCTGTGGATTTTCTGATCTTTATTTAAAAGAGTAAGAAAATAGATGAGTATTACAGAATTCATTTTTTGTTGTTTGTTTTTTGTTTGTTTGTTTGTTTGTTTTTGAGACAAGTTTCGCTTTGTTGCCCAGGCTGGAGTGCAATGGTGCCATCCCAGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGGTTACAGGCGCCCGCCACCACGCCCAGCTAATTTTTGTATTTTTACTAGACATGGGGTTTCACCATGTTGGCCAGGCTGGTCACCAGAATTCCTTTTTAAATCTTGCATTTAATGATGGCAGATTATTTCAGTAGGATCCAGTATTCATTCACCATGAGAATCTCATCCACTCAGTCACAAGGTAGCCATGTGTGAGTTTCAAATGTGCAGATCGGTCCCCCTCCTGATCATTTTCCAATCCCTTCTGAAGGCTTAAAGGGACAGTCTCCCACAAGATGTACTTCTTGGAACTTTCTGTGTAGGTTTTGGGCGGGAGATGACCGCCTTGGCAGGCCAGACCGCTCATAACGCCATGGCTTGGGTTTTCCTTCCCCAG
Seq C2 exon
ATCTGCCTCCGCTTTCACAGTCCTCCAGATTTTTCCAAGAGCAGCAGAAAATGAATAAATCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164631-ZNF12:NM_016265:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.634 A=NA C2=0.333
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCCCCGAGCACGACCC
R:
ACTGTGAAAGCGGAGGCAGAT
Band lengths:
371-1579
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)