MmuINT0178598 @ mm9
Intron Retention
Gene
ENSMUSG00000029587 | Zfp12
Description
zinc finger protein 12 [Source:MGI Symbol;Acc:MGI:99157]
Coordinates
chr5:143996887-143997995:+
Coord C1 exon
chr5:143996887-143997058
Coord A exon
chr5:143997059-143997932
Coord C2 exon
chr5:143997933-143997995
Length
874 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGG
5' ss Score
7.65
3' ss Seq
CGTTGTTTTTCCTTCCCCAGACC
3' ss Score
11.21
Exon sequences
Seq C1 exon
GGTCTGTGTCTCTACGCTCGCAGCTTTGACTTGCGCGAGCTGGAGTCGCGAGCCTGCGGGCCGAGGCCGGTGCGTCCGGGTCGGCAGCAGGCGAACGCAGCTTTGCAGGCCGGGGAGGCCGAGGGCCGGGCTGACGGGGGCAGCGAGACCCGGGCCCGGCGCGGCCTCCTAG
Seq A exon
GTGAGGCCTGAGGGTGCAGATCGCGGCCGTGAGAGGGAGGCTGGGTCCGTCTGATGGCTTGCAGGGGGGCCTGAGACCGCTTGCCGAGGCCTGAGCGATCAGCGCCTGCGCGATGCCTCGGCCCCCTCCTGTCCTCAGCGTGCGGGATCCGGGACGGTAGCAGTGGTCGTGTTGATGGCTTTGGGCTGTCTAGATGGCCCGAGGATGAGGCGTGTGGGCATAGGAGCGGTCAGTTCAGTGACCTGAGCTGTAGAGGCGCTGTCCAAACTCCTACCTCACTTGACATCCCTGCCTCCCAGGGCTTCTAAGTCTCATGATGTTACTGGGCGCCATCGGCACCCTTGCTGTGCCTGTTAGTTTTCCCGATCCTCTCCCTGCAGCATCCTGTGGTCTAGTTCAGGAAAAGTTTGTGTTTGCGTCTGTTCATAGGGGAAGACTGTGGGTCTGCGATAGTGGTGACATAACCGAGGTCACGCAGAGGGTTTGTTAGTGGGAGTGCTAAGTCCCGGGCCGACGGCGTTCCTTTTGTCATATTAAAGTCGTGGTCACAGTATCACGTAATTGTATATAAATACAGTTCCCACCAGGTTAACTTTTGTTTTCAGAGCAGCTTGTGAGTATTCTTTTGTATCCCTTAGTAAATGGCAGTTATTTAACTAGCATTTCTTGTTCATTTCTTGTTAATTCACCTCGTCAGCTGCACTCATTCATTCCCCCCAAGTCCCAACGCACAGTTGCAATTCTCCAGTCCTTTCTGACAGCCAGTGAGACCACCATCCCTCCGGTTTTCTTCTGGGAATGTTCCAGGAGGTTTGTGTGCAGGATTCCCCTCTTTCCACGCCCACTCATAATGACGTTGTTTTTCCTTCCCCAG
Seq C2 exon
ACCCGGCTGCATTAGTCCTTCTACAGACTTTTCCTACTGCAGCGGAAGATGAATACATCCTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029587-Zfp12:NM_177681:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTGTCTCTACGCTCGCAG
R:
GGATGTATTCATCTTCCGCTGCA
Band lengths:
230-1104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: