HsaINT0186175 @ hg38
Intron Retention
Gene
ENSG00000164631 | ZNF12
Description
zinc finger protein 12 [Source:HGNC Symbol;Acc:HGNC:12902]
Coordinates
chr7:6705159-6706923:-
Coord C1 exon
chr7:6706432-6706923
Coord A exon
chr7:6705224-6706431
Coord C2 exon
chr7:6705159-6705223
Length
1208 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
CTTGGGTTTTCCTTCCCCAGATC
3' ss Score
10.48
Exon sequences
Seq C1 exon
CCAGGTCACCGCTCGCCCTAGTTCCCAGGCTTTGGCCTCCGGTGGGCGAGAATCGCGGAGCCTGCGGGGCTGGGCGCCGAAGAGCCGGGCCGGCACCCAAGCGGGCGCGGGGCTGTGCGGGCCAGGCGGAGGCTCAAGCGGGGATCCCCGAGCACGACCCCCGGAGCCGACGGCGCTGGGGCCCAAGGGGCCGGCCGGGCGGTGACGACGGCGGAGGCGAAGGGGCGGCGGGACCCGGGCCCGGCCCGTGTGCGTCCTCGACGGCCCGGCCCCGGCTCCGCAGGACGGTGAGCCCCAGGGAGACGGATCTGGGCTCCGGGAGGGACGCCCCGCCTGGATTTGTCCCGTAGGCCCGGCCCGGGCCCCTCTGGAGCAGAACGGCCTTGGTGAGGTGGACAGGAAGGGACCTCGCGAGCAGACGCGCGCCCGCGACAGCAATCCCGCCCCGGCCTGTCGGGAGCGGTGGGGCAGAGGCTGCGGAGCCCCAGGAGG
Seq A exon
GTAAGTCGTGGGTTTGCGGGCCCGGGGCGAGAAGGGCCTGGGTGAAGTCACCGCGTGTAGGGCACCTTAGAGTGAGGGACAGTGGAAGGTCTCGATCGCTTGCAGGAGTGACGTGTGTTTGGGTTTGAAGGCAGGGTCCGGCGAGGACGAGGCTTACGGGGGCGTGGGGGGTGTCACCAGCCTCAGCTGCGGACGTTGTCTCCACTCCCCCCTCACCCCAGCAGCCCTTCCTCCTCTCTCTGCTCCAGATTGCTACCGTATCTAAACGTCCGTCAGCACCTCTGTTCTCTCATTTAAGTGCTGATTCCCCCTTAGGTCTGCTCTTGTGGAATCATACGTTGTAGTGCAGGAACAGCCTGCAGGAACTATCTCTTGCTGCCTCATTTGCTAGGGGAAGGGCCTTAGCAGGTGGGTGACTTGTCCGAGGTTTTGTGGGTGGAGTTGCTCATAGTAGAACTCTGGAGTTTTATCTCCCAGGCCAGTGTTCTGTCCCCCGTATCCTAGTTAAGTGAGCGTAAGTTCTTCAATAAAAGATCCTTTTGAGTAGCACACTGAAGTTTCTGCAAATAAAGACTCAATTATGCCGACTGTATTCCTTTATTTAGGGCATCCTGTGGATTTTCTGATCTTTATTTAAAAGAGTAAGAAAATAGATGAGTATTACAGAATTCATTTTTTGTTGTTTGTTTTTTGTTTGTTTGTTTGTTTGTTTTTGAGACAAGTTTCGCTTTGTTGCCCAGGCTGGAGTGCAATGGTGCCATCCCAGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGGTTACAGGCGCCCGCCACCACGCCCAGCTAATTTTTGTATTTTTACTAGACATGGGGTTTCACCATGTTGGCCAGGCTGGTCACCAGAATTCCTTTTTAAATCTTGCATTTAATGATGGCAGATTATTTCAGTAGGATCCAGTATTCATTCACCATGAGAATCTCATCCACTCAGTCACAAGGTAGCCATGTGTGAGTTTCAAATGTGCAGATCGGTCCCCCTCCTGATCATTTTCCAATCCCTTCTGAAGGCTTAAAGGGACAGTCTCCCACAAGATGTACTTCTTGGAACTTTCTGTGTAGGTTTTGGGCGGGAGATGACCGCCTTGGCAGGCCAGACCGCTCATAACGCCATGGCTTGGGTTTTCCTTCCCCAG
Seq C2 exon
ATCTGCCTCCGCTTTCACAGTCCTCCAGATTTTTCCAAGAGCAGCAGAAAATGAATAAATCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164631:ENST00000405858:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.167
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCCCCGAGCACGACCC
R:
ACTGTGAAAGCGGAGGCAGAT
Band lengths:
371-1579
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains