MmuINT0178598 @ mm10
Intron Retention
Gene
ENSMUSG00000029587 | Zfp12
Description
zinc finger protein 12 [Source:MGI Symbol;Acc:MGI:99157]
Coordinates
chr5:143235174-143236316:+
Coord C1 exon
chr5:143235174-143235379
Coord A exon
chr5:143235380-143236253
Coord C2 exon
chr5:143236254-143236316
Length
874 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGG
5' ss Score
7.65
3' ss Seq
CGTTGTTTTTCCTTCCCCAGACC
3' ss Score
11.21
Exon sequences
Seq C1 exon
AGCGCACGTCCGCTGCGCTGGCCTGGCTTCCTGCGGTCTGTGTCTCTACGCTCGCAGCTTTGACTTGCGCGAGCTGGAGTCGCGAGCCTGCGGGCCGAGGCCGGTGCGTCCGGGTCGGCAGCAGGCGAACGCAGCTTTGCAGGCCGGGGAGGCCGAGGGCCGGGCTGACGGGGGCAGCGAGACCCGGGCCCGGCGCGGCCTCCTAG
Seq A exon
GTGAGGCCTGAGGGTGCAGATCGCGGCCGTGAGAGGGAGGCTGGGTCCGTCTGATGGCTTGCAGGGGGGCCTGAGACCGCTTGCCGAGGCCTGAGCGATCAGCGCCTGCGCGATGCCTCGGCCCCCTCCTGTCCTCAGCGTGCGGGATCCGGGACGGTAGCAGTGGTCGTGTTGATGGCTTTGGGCTGTCTAGATGGCCCGAGGATGAGGCGTGTGGGCATAGGAGCGGTCAGTTCAGTGACCTGAGCTGTAGAGGCGCTGTCCAAACTCCTACCTCACTTGACATCCCTGCCTCCCAGGGCTTCTAAGTCTCATGATGTTACTGGGCGCCATCGGCACCCTTGCTGTGCCTGTTAGTTTTCCCGATCCTCTCCCTGCAGCATCCTGTGGTCTAGTTCAGGAAAAGTTTGTGTTTGCGTCTGTTCATAGGGGAAGACTGTGGGTCTGCGATAGTGGTGACATAACCGAGGTCACGCAGAGGGTTTGTTAGTGGGAGTGCTAAGTCCCGGGCCGACGGCGTTCCTTTTGTCATATTAAAGTCGTGGTCACAGTATCACGTAATTGTATATAAATACAGTTCCCACCAGGTTAACTTTTGTTTTCAGAGCAGCTTGTGAGTATTCTTTTGTATCCCTTAGTAAATGGCAGTTATTTAACTAGCATTTCTTGTTCATTTCTTGTTAATTCACCTCGTCAGCTGCACTCATTCATTCCCCCCAAGTCCCAACGCACAGTTGCAATTCTCCAGTCCTTTCTGACAGCCAGTGAGACCACCATCCCTCCGGTTTTCTTCTGGGAATGTTCCAGGAGGTTTGTGTGCAGGATTCCCCTCTTTCCACGCCCACTCATAATGACGTTGTTTTTCCTTCCCCAG
Seq C2 exon
ACCCGGCTGCATTAGTCCTTCTACAGACTTTTCCTACTGCAGCGGAAGATGAATACATCCTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029587:ENSMUST00000032591:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGCTTCCTGCGGTCT
R:
AGGATGTATTCATCTTCCGCTGC
Band lengths:
246-1120
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types