HsaINT0186223 @ hg19
Intron Retention
Gene
ENSG00000196387 | ZNF140
Description
zinc finger protein 140 [Source:HGNC Symbol;Acc:12925]
Coordinates
chr12:133659689-133660147:+
Coord C1 exon
chr12:133659689-133659815
Coord A exon
chr12:133659816-133660051
Coord C2 exon
chr12:133660052-133660147
Length
236 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
ATTTCATTTTCTGCAAGCAGGTC
3' ss Score
6.34
Exon sequences
Seq C1 exon
GGGTCAGTGACATTCAGAGATGTGGCCATAGACTTCTCCCAGGAGGAGTGGAAATGGCTTCAGCCTGCTCAAAGAGATTTGTACAGATGTGTAATGTTGGAGAACTATGGCCATCTGGTCTCACTGG
Seq A exon
GTAAGTATTCTTCTTCATCTCCCTCAAGGCAAAATTTGACCGTTAGGGTGGCTGTTATAATTATCTGGCTGAATATTCCCAAGAGAGGTATGGGGTTTCTTAAAATTAGTTTTAAGATGGGGACGTAACTGCACCTTATTTTTAGACATTTTAAAAACTTACATCTGACATTTCCTTTGTGGCCCCTCTTAGGATTCAATGACTGATCTTGAATTTATTTCATTTTCTGCAAGCAG
Seq C2 exon
GTCTTTCCATTTCTAAGCCAGATGTGGTTTCCTTATTGGAGCAAGGGAAAGAACCCTGGCTGGGGAAAAGGGAAGTGAAAAGAGATCTGTTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196387-ZNF140:NM_003440:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=100.0)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTCAGTGACATTCAGAGATGT
R:
TGAAAACAGATCTCTTTTCACTTCCC
Band lengths:
222-458
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)