HsaINT0186296 @ hg38
Intron Retention
Gene
ENSG00000175787 | ZNF169
Description
zinc finger protein 169 [Source:HGNC Symbol;Acc:HGNC:12957]
Coordinates
chr9:94292974-94301454:+
Coord C1 exon
chr9:94292974-94293069
Coord A exon
chr9:94293070-94299447
Coord C2 exon
chr9:94299448-94301454
Length
6378 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
AGTCTGTTTCTTAACTGCAGCTC
3' ss Score
7.6
Exon sequences
Seq C1 exon
GAATTGCATTTTCCAAACCAAAACTCATCGAACAGCTGGAGCAAGGCGACGAACCTTGGAGAGAGGAGAACGAACATCTTCTGGACCTTTGTCCAG
Seq A exon
GTGAGTGGGAAGCCCTGGGCAAGCGAGGGTGCAGGGCAGTGAGGAGCTCAGCAGGTAAGGAAGGAGGGGCTATCTTTGAGGTGCTAGGAGGAAGTTCTTCTTCAGGCCTCCTAGGCCACTGGTAAAGGCTGCATGGCACTGCCTGCCTTCCACACTGTGTGCCTCCCCCCAGGACAGGGCACCCCTGGCATTCCATCTCCTTCCTCCATCAGGGAGCCTCACTCCTCACTTGGCTTCCTTTCTCGAGCACATTCAGGATTTCTCCATTCTTGGGCTCATGTGGTTGGCATGATCTTCAAAACAGTACCTGTCCTTTGAGACTAAGTCCCTGCCCCTGGTTTTTTATTTTTATTTTTATTTTTTTTGAGACAGAGTCTCGTTCTGTCACCCAGGCTGGAGTGCAATGGCATGATCTCGGCTCACTGCAACCTCTGCCTCCTGTGTTCAAGTGATTTCTCCTGCCTCACCCTCCTGAGTAGCTGGGACTACAGGTGCCCGCCATCATGCCCAGCTAAATTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCTTATTGGTCAGGCTGGTCTTGAATTCCTGAGCTCAGGCAATCCATCTGCCTTTGCTTCCCAAAGTGTTGGGATTACAGGCGTGAGCCACCACGCCCAGCCAGTTTCTATTCTTAACCTGGTAGCTTTTTTGTGCATCATTTCTATCCTGTAAATTCTCATAACTTTGTTTCTTTTATCATAGATTATTTAAGATTACAGCAAGGTGTGAAAAACTGTACAATGAGTAGGGTTGGGGCAGCCCTGTACCCTAAGAGATAGCATGTTATAAAACCAGGTAATAGCCCCATACTTTTCCTGATTGTGTCCCGTTCCTCCGCCTCTGTTTTCTGAGTTAGCATTCCATGACTGTCTTTATCCTTTTATTCCATCTGATGGGTTCTTCACTCATATAGGGTGTTGTTTTGCATGTCTGTAAACTTCTCTGCACATAATGTTATTAAGTTGTTTCCAACTTTTTGGCTATGAAATAATCTTGCTCTGTATTCTTGTATGCCTCCTTGGGAACATGTCCAAGAGTTTCTCTTAAAATATATACCGGCCAGGTGCAGTGGCTCACACCTGTAATCCCAGCACTCTGGGAGGCCGAGGCAGGTGGATCACGAGGTCAGGAATTCGAGACCATTCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATAGAAAAATTAGCTGGGTGTGGTGGCGCATGCCTATAATCTTAGCTACTTGGGAGGCTGAGGCAGGAGAATTGCTTGAATCCGGGAGGCGGACGTTGCAGTGAACTGAGATTGCGCCACTGCACTCCAGCCTAGGTGACAGAGCGAGTCTCCATCTCACAAAGAAAAAAAAAAAGATATATACTTAGGTGTGTAGTAGCTGGTTCACAGGCATGCATAGCCTCAACTTATATAAGTTATGCCAACTTGTGTTCTGAAGTGGGCATGGCAGCTTATGCTCCCAGCAGGAGTCTATGAGAATTCTTGTTGTACATCCTCACCAACATTTGGGATTGTGAGACCTCATGTTTTATCCATCTATTCAGCTGGAAGTGAAATCTCAGAGGGGTTTTTAAGTTGCTTACTAGTGAGCATGAGCATCTTTTCATATGTTGCTTGGCCCTTCCTGTTTCCCCATCTGTGATTTGACCATTCAAGGTGTTTGCCTACTTTTCAATGGGTCTATTCTTTTTGTTATTGATTTGTAGAAATCCCATATAAATTATGGAAACATTTAGGTCTTTAACTGGAATTAATTTTATATGAATGCTGGGAGATAGAAATAAATTTTTGCCTGCTTTATCTTCTTACTTGTTTATTTTCATGGTTTCCTGGCATTTTATTTTTGTTTTATTTTTTGCTTTTAAATGTAACTATATAGCTGGTATTACACTATGTAGCAACTGAGTGCTTTTGTCTTTTTAAAAGCATTTCGTTATATAAAAATGGGGTGGGCACAGTGGCTCACGCCTGTAATCCCAGACTTTGAGAGGCTGAGGTGGGTGGATCACTTGAGGCCAGGAGTTTGAGACCAGCCTGGCCAACATGGCAAAATCCCGTCTCTACTAAAAATACACAAATTAGCCGAGCCTGGTGGTGCATGCCTGAAATACCAGCTACTCGGATGGCTGAGGAGTGAGAATCGCTTGAACCTGGGAGGCGAAGGTTGCAATGAACTGAGATCACACCACTGTACTCCAGCCTGGGCTACAGAGTGAGACTCTGTCTCAAAAAAAAATAAAGTAAAATAATGATAAAAATGTTATTAAGATACAGCAATTAAGGTATATTATAAGATATGTTTTTTAAGGTATAATAAACTACACTTATATAGGTGTGAAATTTGGTTAGTTTTGGCATATGTATACATGCATGAAAGCACTGCCACAGCTAAAGTAACAAGCATGTCTGTCATCCTTGAAAATTTTCTTTCGCCTTACTGTAATCCTACCTCCCACTCCTTCCTGTCCTCCCCTGTACCTGGGCAACCACTGATCAGCTTTCTATAATTATAGATTTGTCTGCATTTTCTAGAATTTGTATAACTGGATTATACAGGATACAACTGGATTCTTCACTCAGCATAAGTATTTTGAATTTTATCTATAATGTGTGTATCAATAGTTTATTAATTTTTATTGCTGAGTATTCCTTTATATGTCTAGGTCACATTTTAATACTGACCTATTAAAAGGTATTTGGGTTTTCATTTTTGACAAATATAAATAAAGCTGTTTTAAGCATGCAAGTTTTTGTGTGAATATAATGCTTTCATTTCTGTTGAATAAATACCTGGGACTGGAATGGCTGGGTTGTATGATGATGGATACAATATATATTCAACTTTTGAAGAAACTCACAAACTGCTTTCCAAAGTGGCCGCACCATTTCACATTCCCACAGCAGTGTATGAGAGCTCCAGGTGTTCCATATTTGTCAAAACTTGGCTTGGTTATTAATTTCAGACATTCTTATAGCTGTGTAGTGAGTGGCATCTTACCGTGGTTTTAACATTTTCTTAATGACTGATGATGTTGAGTATCTTCATGTGCTTATTTGCTATCTTATATCTTCTTTAGTGAAGTACGTTTTCACATCTTTTGCCCATTTAAAAATGTGGTTTCTTATTTTTGTATTATTGAGTTTGAGAGTTCTTCACATATTCTATGTAGAAGTCCATTATCAGATATATGATTTACAAACATTTTTTCTGTGGTTTACTTTCTATAATCTTAATAGTGCCTTTCAAAGAGAAATTTTAATTTGGATGAAGTCCAGTTTTCAATCTTTTCTCTTATGAATTGCAGTTTTGGTAGTGTATTTAAGAAATTTTAGTCTAAAGTAAGGTCAAAAAGATTCTCATTTTTTTCTTTTAGTAATTTTACAATTTTTAATTACATTTAGGTCTATAAGCCTATTTTGAGTAAATATACTTGATAAAAGATCTGAATTTATGTACTTTTTTAGGGGAGGAAGGGCATACAAATATCCAATTTTTCCAGCACCATTTATTGAAAACACTACCCTTTTTTAACTGAATTTCCTATGTATCTTTGTGGAAGATCAGTTGACCATATGTGATAGGTCTATACCTGGACTCTATGTTTTTTCTACTCCTCTGTTAGTGTCTCTATGCCAATACCACAGTTTTGATTACTGTAGCTTTATTAGGTCTTGAACTCACTGTAAATCCTCCATCTTCTTTGGGAAGCTTAGGCAGGCGGATCACAAGGTCAGGAGTTCGAGACTAGTCTGGCCAACATAGTGAAACCCCATCTCTACTAAAAATACAAAAAAAACTAGCCGAGTGTGGTGGTGCGCACCTGTAATCACAGCTACTCGGGAGGCTGAGGCAGGAGGATCGCGTGAACTCGGGAGGCGGAGGTTGCAGTGAGCCGAGATCACACTATTGCACTCCAGCCCAGGCAACAGTGCGAGACTCCATCTCAAAATAAAATAAAATAAAATAAAAAATCCTCCATCTTTGCTTTTTTTTGCAAGTTCTTTTCGTTATTCTTTGTTTTTTCATATGAATTTTAGAATCAGCTTGTCAGTTTTTAACAAAAATGCCTGCTGAGATTTTGATTGGGATCGAGTTGAATCTGTATCAATTTGTGGAGAACTTACACATAAATAATACTGTGTCTTACAGTACGTGAACACAGTATAGCTCTCCATTTACATAAGACTTCTTTCATTTTTGTCGGCATTGTTTTGTCATTTCTGGTATACAGGCCTTACATATCTCTTGTCAGATTTGCCCCTAAGTATTTCATATTTTGATGCTATTTTTAAGTGTCAATTTTCAGTTGTTTATTGATGGTATGTAGAAATAAAATGGATTTATGTATAGTGATTTTGTATGCTGTAATCTTGCAAAACTCACATCTTTTTCCACTGGAATATTTTAATATGAAGGACCTTCTCTGTATTCCAGATGGAATGTGAATGGCAATCCCTAAAGCTGCTGAAGTTCCCTCTTGCAGATATGATCTTACTGACTCTAATCAATGATACAAAGAGTTTTTCTTAGGAATAGTATGGTCAAAAATAAGAAATACGTATTTTGTGATTAAAAATAGTTAACAAATAGAATAACATATAAATCAGTATTGTATTTATAATCGTCTGCCTTGAACCAAGGGTCTTCTGTTAAGTAGTTTAATTCCATTAAATTGTTCACTTCTGTTCTGATAGGGCACTTGAAACCCTGATTCAGTTTCTTGCTATGGGTTGCTACTTGCCAGGTACATTTCTGATCAATGCTCTTAAAAATTTGTTCCAGGGGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGCGAATCACTTGAGGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGTGAGACCCTGTCACTACTAAAAATACAAAAAATTAGCCAGGCGTAGTAGGTGCGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGTGGGAGAATTGCTTGAACCCAGGAGGTGGAGGTTGCAGTGGGCTGAGATAGTGCCACTGTACTCCAGCCTAGGCGACAGTGCGAGACTCCTTTAAAAAAAAAAAAAAAAATTTGTTCAAGGAGACTCAATTTCTAATCTGAGTTAAAAAGCAGGAGTCTTTAAACAAAAGTAAGATAAAAAAGATAAACTAGCCATGAATAAGAAAATGCCTTATTTTTCTCTTACCAAATGCTTTGCTTATTCACTACAGCAAACAATTTCAGAGATAATGAAAGCAGACTTCTCTATTGAGGGCTGTCCCATAATGACTCATAAGAACTTAGTCCTGCCGAGCGCAGTGGCTCATGCCTATAACCCCAGCACTTTGGGAGGCCGAGGCAGGCGGATCACCTAAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTCACCTAAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGAAACCCGATCTCTACTAAAAATACAAAACTTAGCCGGGCATGGTGGTGCACGCCTGTAATCCCAGCTGCTCAGGAGGCTGAGACAGGAGAATTGCTTGAACCAGAGGTTGCAGTCAGCCAAGATCACGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAAAAAGAACTTAGTCAATAATTACCTAGGAGTTACGGTATCAACTTACGGAAGCTGAAAGCACTGCCAATTTCCAGAGCCTTTAATTTATACCATCATGGGAATTAGTGTTATCTCCAATTGGCAGCCTATTTAAACCTAGAAACAAAATTTTTTGAAAAAGTCAATTTGTATAGTTTTAACAGTTTTTGTGCATGGATAAGAATATGCTTAAGCCGAAATATGTATAATCCCTGAAACATCTTTATGCTAATGAGAAGTCATCTATTATTAACTTTCAAACGCTGAGCTTCTCCTTAATTCACCAGATTTTTTTAAAAATCCTGGATTATTGAGCAAAACAGTGTACGTAGTGTTGTGCAATGCTATTCGGGGAATATACTTGGCTGCAGTCTTCCCAGAGGCTAGAGGACAGCACCTTCATTTGCCCGGAGGGCAGCATCAGGGATTCCTCTTCTTCAAGAGGACTTAAGGGTGTCCATACAGTTCAGGAGACAACTCACATCAGGCTGATATGGAAGCTCCCTGGCCTAAAGCCTATTCCACACAGGAGCCAGTATCTCTTGCTACAGCTTATCTGATTCGTGGGTGCCCCTTACTTGAGTCACCACAGTCAAGGAAGCCCAAAGCATGGCTCCCCTTCAGATGCTAAGATCTTATTTATAGCACCTTCAAGATCATAATCAGTCTGTTTCTTAACTGCAG
Seq C2 exon
CTCAGACACCAAGTTCTTGGCTCTTGCATAAACAGCAGGCCGAACAAATGTTTCTCAGGCAAGGTTTAATAGGCTTGAGCTGGAGCAAAAGCAAGGGAGCGGCGCCCAAGAAAGGAAGATAAATGTGTAACTCTACTTGCAGCAATTTATAGAGCTGAAGCTGCCTGTGATGCTTTTTTGAACCTTTTAGTTTGGCTGATAGGACTAGTTTGTAGTGTGGGTTTTCTGTGCTGCAATAGAGCATGTAATGTGCCCTTGTGGGTTGGAAGATAAGTCTTTGTTGTGAACATCTGAAGAAAACTGCTGGGCAGGTATTACAATCCATGGTCACCTGTGGTGATTCTGACCAAGACTTTCTCTCTAGCAGAGCCTAGAACAGAATTCCAGCCAAGTTTTCCCCACCTGGTGGCCTTTTCTAGCTCGCAGCTCCTCAGACAATATGCGCTAAGTGGCCATCCCACACAGATCTTCCCAAGCTCATCTGCAGGAGGTGACTTCCAACTAGAAGCTCCAAGATGCTCTAGTGAAAAAGGAGAAAGTGGAGAGACAGAAGGCCCCGACAGCTCATTAAGAAAGAGGCCAAGCAGAATTTCTAGGACATTCTTCAGCCCACATCAAGGTGACCCAGTAGAATGGGTAGAAGGGAACAGAGAAGGAGGAACAGACCTTCGCCTGGCCCAAAGGATGAGTCTTGGGGGGTCAGACACAATGTTGAAGGGAGCAGACACTTCAGAATCTGGAGCAGTCATACGTGGAAACTATAGACTGGGACTTAGCAAAAAGTCAAGCCTGTTCAGCCACCAGAAGCATCATGTGTGCCCTGAATGCGGGAGAGGCTTTTGCCAGAGATCAGACCTTATCAAGCACCAGAGGACACACACCGGGGAGAAGCCATACCTGTGTCCTGAGTGTGGGCGTCGGTTTAGCCAGAAGGCCTCCCTCTCCATACACCAGAGGAAGCACTCGGGGGAGAAGCCGTATGTGTGCAGGGAATGTGGGCGACACTTCAGGTATACATCCTCTCTCACTAATCACAAGAGGATTCACTCCGGGGAGAGGCCCTTTGTATGTCAGGAGTGTGGGCGAGGCTTTCGCCAGAAGATAGCCCTCCTTCTACACCAGAGGACGCACTTGGAGGAGAAGCCCTTCGTGTGTCCTGAGTGTGGGAGAGGCTTTTGCCAGAAGGCATCACTCCTCCAGCACCAGAGCTCACACACAGGGGAGAGGCCCTTCCTGTGCCTTGAGTGTGGGCGTAGCTTCAGGCAGCAGTCACTCCTCCTTAGTCACCAGGTCACACACTCAGGAGAGAAGCCTTATGTCTGTGCTGAGTGTGGGCACAGCTTTCGCCAAAAGGTCACTCTCATCAGGCACCAGAGGACACACACAGGGGAGAAGCCTTACCTGTGCCCCCAGTGTGGGCGGGGTTTTAGCCAGAAGGTCACCCTCATTGGACACCAGAGGACACACACAGGGGAGAAGCCCTACCTGTGCCCTGATTGTGGGCGTGGCTTTGGTCAGAAGGTCACCCTCATCAGACACCAGAGGACACACACAGGGGAGAAGCCTTATCTGTGCCCCAAGTGTGGGCGTGCATTTGGCTTTAAGTCGCTCCTCACCCGACACCAGAGGACACACTCAGAGGAGGAGCTTTACGTAGACAGGGTGTGTGGACAAGGACTTGGCCAGAAGTCACACCTTATCTCTGACCAAAGGACACACTCAGGAGAGAAGCCCTGCATTTGCGATGAATGTGGGCGCGGCTTTGGCTTTAAGTCTGCCCTCATCCGACATCAGCGGACCCATTCTGGGGAGAAGCCGTATGTCTGCAGGGAGTGTGGGCGTGGCTTTAGCCAGAAGTCTCACTTGCATAGACACAGGAGGACCAAGTCTGGTCATCAGCTCCTACCCCAAGAGGTCTTCTGACCTTTCCTTTCCCCGTGAGTGTGAAGCTGGCAGAAATCACTAGTAAATGCTTCAGTTTCCTGAAATGGAATGGAAAAAAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000175787:ENST00000340911:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.405 A=NA C2=0.202
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains