HsaINT0186296 @ hg19
Intron Retention
Gene
ENSG00000175787 | ZNF169
Description
zinc finger protein 169 [Source:HGNC Symbol;Acc:12957]
Coordinates
chr9:97055256-97065291:+
Coord C1 exon
chr9:97055256-97055351
Coord A exon
chr9:97055352-97062096
Coord C2 exon
chr9:97062097-97065291
Length
6745 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CAAGACTTTCTCTCTAGCAGAGC
3' ss Score
4.93
Exon sequences
Seq C1 exon
GAATTGCATTTTCCAAACCAAAACTCATCGAACAGCTGGAGCAAGGCGACGAACCTTGGAGAGAGGAGAACGAACATCTTCTGGACCTTTGTCCAG
Seq A exon
GTGAGTGGGAAGCCCTGGGCAAGCGAGGGTGCAGGGCAGTGAGGAGCTCAGCAGGTAAGGAAGGAGGGGCTATCTTTGAGGTGCTAGGAGGAAGTTCTTCTTCAGGCCTCCTAGGCCACTGGTAAAGGCTGCATGGCACTGCCTGCCTTCCACACTGTGTGCCTCCCCCCAGGACAGGGCACCCCTGGCATTCCATCTCCTTCCTCCATCAGGGAGCCTCACTCCTCACTTGGCTTCCTTTCTCGAGCACATTCAGGATTTCTCCATTCTTGGGCTCATGTGGTTGGCATGATCTTCAAAACAGTACCTGTCCTTTGAGACTAAGTCCCTGCCCCTGGTTTTTTATTTTTATTTTTATTTTTTTTGAGACAGAGTCTCGTTCTGTCACCCAGGCTGGAGTGCAATGGCATGATCTCGGCTCACTGCAACCTCTGCCTCCTGTGTTCAAGTGATTTCTCCTGCCTCACCCTCCTGAGTAGCTGGGACTACAGGTGCCCGCCATCATGCCCAGCTAAATTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCTTATTGGTCAGGCTGGTCTTGAATTCCTGAGCTCAGGCAATCCATCTGCCTTTGCTTCCCAAAGTGTTGGGATTACAGGCGTGAGCCACCACGCCCAGCCAGTTTCTATTCTTAACCTGGTAGCTTTTTTGTGCATCATTTCTATCCTGTAAATTCTCATAACTTTGTTTCTTTTATCATAGATTATTTAAGATTACAGCAAGGTGTGAAAAACTGTACAATGAGTAGGGTTGGGGCAGCCCTGTACCCTAAGAGATAGCATGTTATAAAACCAGGTAATAGCCCCATACTTTTCCTGATTGTGTCCCGTTCCTCCGCCTCTGTTTTCTGAGTTAGCATTCCATGACTGTCTTTATCCTTTTATTCCATCTGATGGGTTCTTCACTCATATAGGGTGTTGTTTTGCATGTCTGTAAACTTCTCTGCACATAATGTTATTAAGTTGTTTCCAACTTTTTGGCTATGAAATAATCTTGCTCTGTATTCTTGTATGCCTCCTTGGGAACATGTCCAAGAGTTTCTCTTAAAATATATACCGGCCAGGTGCAGTGGCTCACACCTGTAATCCCAGCACTCTGGGAGGCCGAGGCAGGTGGATCACGAGGTCAGGAATTCGAGACCATTCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATAGAAAAATTAGCTGGGTGTGGTGGCGCATGCCTATAATCTTAGCTACTTGGGAGGCTGAGGCAGGAGAATTGCTTGAATCCGGGAGGCGGACGTTGCAGTGAACTGAGATTGCGCCACTGCACTCCAGCCTAGGTGACAGAGCGAGTCTCCATCTCACAAAGAAAAAAAAAAAGATATATACTTAGGTGTGTAGTAGCTGGTTCACAGGCATGCATAGCCTCAACTTATATAAGTTATGCCAACTTGTGTTCTGAAGTGGGCATGGCAGCTTATGCTCCCAGCAGGAGTCTATGAGAATTCTTGTTGTACATCCTCACCAACATTTGGGATTGTGAGACCTCATGTTTTATCCATCTATTCAGCTGGAAGTGAAATCTCAGAGGGGTTTTTAAGTTGCTTACTAGTGAGCATGAGCATCTTTTCATATGTTGCTTGGCCCTTCCTGTTTCCCCATCTGTGATTTGACCATTCAAGGTGTTTGCCTACTTTTCAATGGGTCTATTCTTTTTGTTATTGATTTGTAGAAATCCCATATAAATTATGGAAACATTTAGGTCTTTAACTGGAATTAATTTTATATGAATGCTGGGAGATAGAAATAAATTTTTGCCTGCTTTATCTTCTTACTTGTTTATTTTCATGGTTTCCTGGCATTTTATTTTTGTTTTATTTTTTGCTTTTAAATGTAACTATATAGCTGGTATTACACTATGTAGCAACTGAGTGCTTTTGTCTTTTTAAAAGCATTTCGTTATATAAAAATGGGGTGGGCACAGTGGCTCACGCCTGTAATCCCAGACTTTGAGAGGCTGAGGTGGGTGGATCACTTGAGGCCAGGAGTTTGAGACCAGCCTGGCCAACATGGCAAAATCCCGTCTCTACTAAAAATACACAAATTAGCCGAGCCTGGTGGTGCATGCCTGAAATACCAGCTACTCGGATGGCTGAGGAGTGAGAATCGCTTGAACCTGGGAGGCGAAGGTTGCAATGAACTGAGATCACACCACTGTACTCCAGCCTGGGCTACAGAGTGAGACTCTGTCTCAAAAAAAAATAAAGTAAAATAATGATAAAAATGTTATTAAGATACAGCAATTAAGGTATATTATAAGATATGTTTTTTAAGGTATAATAAACTACACTTATATAGGTGTGAAATTTGGTTAGTTTTGGCATATGTATACATGCATGAAAGCACTGCCACAGCTAAAGTAACAAGCATGTCTGTCATCCTTGAAAATTTTCTTTCGCCTTACTGTAATCCTACCTCCCACTCCTTCCTGTCCTCCCCTGTACCTGGGCAACCACTGATCAGCTTTCTATAATTATAGATTTGTCTGCATTTTCTAGAATTTGTATAACTGGATTATACAGGATACAACTGGATTCTTCACTCAGCATAAGTATTTTGAATTTTATCTATAATGTGTGTATCAATAGTTTATTAATTTTTATTGCTGAGTATTCCTTTATATGTCTAGGTCACATTTTAATACTGACCTATTAAAAGGTATTTGGGTTTTCATTTTTGACAAATATAAATAAAGCTGTTTTAAGCATGCAAGTTTTTGTGTGAATATAATGCTTTCATTTCTGTTGAATAAATACCTGGGACTGGAATGGCTGGGTTGTATGATGATGGATACAATATATATTCAACTTTTGAAGAAACTCACAAACTGCTTTCCAAAGTGGCCGCACCATTTCACATTCCCACAGCAGTGTATGAGAGCTCCAGGTGTTCCATATTTGTCAAAACTTGGCTTGGTTATTAATTTCAGACATTCTTATAGCTGTGTAGTGAGTGGCATCTTACCGTGGTTTTAACATTTTCTTAATGACTGATGATGTTGAGTATCTTCATGTGCTTATTTGCTATCTTATATCTTCTTTAGTGAAGTACGTTTTCACATCTTTTGCCCATTTAAAAATGTGGTTTCTTATTTTTGTATTATTGAGTTTGAGAGTTCTTCACATATTCTATGTAGAAGTCCATTATCAGATATATGATTTACAAACATTTTTTCTGTGGTTTACTTTCTATAATCTTAATAGTGCCTTTCAAAGAGAAATTTTAATTTGGATGAAGTCCAGTTTTCAATCTTTTCTCTTATGAATTGCAGTTTTGGTAGTGTATTTAAGAAATTTTAGTCTAAAGTAAGGTCAAAAAGATTCTCATTTTTTTCTTTTAGTAATTTTACAATTTTTAATTACATTTAGGTCTATAAGCCTATTTTGAGTAAATATACTTGATAAAAGATCTGAATTTATGTACTTTTTTAGGGGAGGAAGGGCATACAAATATCCAATTTTTCCAGCACCATTTATTGAAAACACTACCCTTTTTTAACTGAATTTCCTATGTATCTTTGTGGAAGATCAGTTGACCATATGTGATAGGTCTATACCTGGACTCTATGTTTTTTCTACTCCTCTGTTAGTGTCTCTATGCCAATACCACAGTTTTGATTACTGTAGCTTTATTAGGTCTTGAACTCACTGTAAATCCTCCATCTTCTTTGGGAAGCTTAGGCAGGCGGATCACAAGGTCAGGAGTTCGAGACTAGTCTGGCCAACATAGTGAAACCCCATCTCTACTAAAAATACAAAAAAAACTAGCCGAGTGTGGTGGTGCGCACCTGTAATCACAGCTACTCGGGAGGCTGAGGCAGGAGGATCGCGTGAACTCGGGAGGCGGAGGTTGCAGTGAGCCGAGATCACACTATTGCACTCCAGCCCAGGCAACAGTGCGAGACTCCATCTCAAAATAAAATAAAATAAAATAAAAAATCCTCCATCTTTGCTTTTTTTTGCAAGTTCTTTTCGTTATTCTTTGTTTTTTCATATGAATTTTAGAATCAGCTTGTCAGTTTTTAACAAAAATGCCTGCTGAGATTTTGATTGGGATCGAGTTGAATCTGTATCAATTTGTGGAGAACTTACACATAAATAATACTGTGTCTTACAGTACGTGAACACAGTATAGCTCTCCATTTACATAAGACTTCTTTCATTTTTGTCGGCATTGTTTTGTCATTTCTGGTATACAGGCCTTACATATCTCTTGTCAGATTTGCCCCTAAGTATTTCATATTTTGATGCTATTTTTAAGTGTCAATTTTCAGTTGTTTATTGATGGTATGTAGAAATAAAATGGATTTATGTATAGTGATTTTGTATGCTGTAATCTTGCAAAACTCACATCTTTTTCCACTGGAATATTTTAATATGAAGGACCTTCTCTGTATTCCAGATGGAATGTGAATGGCAATCCCTAAAGCTGCTGAAGTTCCCTCTTGCAGATATGATCTTACTGACTCTAATCAATGATACAAAGAGTTTTTCTTAGGAATAGTATGGTCAAAAATAAGAAATACGTATTTTGTGATTAAAAATAGTTAACAAATAGAATAACATATAAATCAGTATTGTATTTATAATCGTCTGCCTTGAACCAAGGGTCTTCTGTTAAGTAGTTTAATTCCATTAAATTGTTCACTTCTGTTCTGATAGGGCACTTGAAACCCTGATTCAGTTTCTTGCTATGGGTTGCTACTTGCCAGGTACATTTCTGATCAATGCTCTTAAAAATTTGTTCCAGGGGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGCGAATCACTTGAGGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGTGAGACCCTGTCACTACTAAAAATACAAAAAATTAGCCAGGCGTAGTAGGTGCGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGTGGGAGAATTGCTTGAACCCAGGAGGTGGAGGTTGCAGTGGGCTGAGATAGTGCCACTGTACTCCAGCCTAGGCGACAGTGCGAGACTCCTTTAAAAAAAAAAAAAAAAATTTGTTCAAGGAGACTCAATTTCTAATCTGAGTTAAAAAGCAGGAGTCTTTAAACAAAAGTAAGATAAAAAAGATAAACTAGCCATGAATAAGAAAATGCCTTATTTTTCTCTTACCAAATGCTTTGCTTATTCACTACAGCAAACAATTTCAGAGATAATGAAAGCAGACTTCTCTATTGAGGGCTGTCCCATAATGACTCATAAGAACTTAGTCCTGCCGAGCGCAGTGGCTCATGCCTATAACCCCAGCACTTTGGGAGGCCGAGGCAGGCGGATCACCTAAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTCACCTAAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGAAACCCGATCTCTACTAAAAATACAAAACTTAGCCGGGCATGGTGGTGCACGCCTGTAATCCCAGCTGCTCAGGAGGCTGAGACAGGAGAATTGCTTGAACCAGAGGTTGCAGTCAGCCAAGATCACGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAAAAAGAACTTAGTCAATAATTACCTAGGAGTTACGGTATCAACTTACGGAAGCTGAAAGCACTGCCAATTTCCAGAGCCTTTAATTTATACCATCATGGGAATTAGTGTTATCTCCAATTGGCAGCCTATTTAAACCTAGAAACAAAATTTTTTGAAAAAGTCAATTTGTATAGTTTTAACAGTTTTTGTGCATGGATAAGAATATGCTTAAGCCGAAATATGTATAATCCCTGAAACATCTTTATGCTAATGAGAAGTCATCTATTATTAACTTTCAAACGCTGAGCTTCTCCTTAATTCACCAGATTTTTTTAAAAATCCTGGATTATTGAGCAAAACAGTGTACGTAGTGTTGTGCAATGCTATTCGGGGAATATACTTGGCTGCAGTCTTCCCAGAGGCTAGAGGACAGCACCTTCATTTGCCCGGAGGGCAGCATCAGGGATTCCTCTTCTTCAAGAGGACTTAAGGGTGTCCATACAGTTCAGGAGACAACTCACATCAGGCTGATATGGAAGCTCCCTGGCCTAAAGCCTATTCCACACAGGAGCCAGTATCTCTTGCTACAGCTTATCTGATTCGTGGGTGCCCCTTACTTGAGTCACCACAGTCAAGGAAGCCCAAAGCATGGCTCCCCTTCAGATGCTAAGATCTTATTTATAGCACCTTCAAGATCATAATCAGTCTGTTTCTTAACTGCAGCTCAGACACCAAGTTCTTGGCTCTTGCATAAACAGCAGGCCGAACAAATGTTTCTCAGGCAAGGTTTAATAGGCTTGAGCTGGAGCAAAAGCAAGGGAGCGGCGCCCAAGAAAGGAAGATAAATGTGTAACTCTACTTGCAGCAATTTATAGAGCTGAAGCTGCCTGTGATGCTTTTTTGAACCTTTTAGTTTGGCTGATAGGACTAGTTTGTAGTGTGGGTTTTCTGTGCTGCAATAGAGCATGTAATGTGCCCTTGTGGGTTGGAAGATAAGTCTTTGTTGTGAACATCTGAAGAAAACTGCTGGGCAGGTATTACAATCCATGGTCACCTGTGGTGATTCTGACCAAGACTTTCTCTCTAGCAG
Seq C2 exon
AGCCTAGAACAGAATTCCAGCCAAGTTTTCCCCACCTGGTGGCCTTTTCTAGCTCGCAGCTCCTCAGACAATATGCGCTAAGTGGCCATCCCACACAGATCTTCCCAAGCTCATCTGCAGGAGGTGACTTCCAACTAGAAGCTCCAAGATGCTCTAGTGAAAAAGGAGAAAGTGGAGAGACAGAAGGCCCCGACAGCTCATTAAGAAAGAGGCCAAGCAGAATTTCTAGGACATTCTTCAGCCCACATCAAGGTGACCCAGTAGAATGGGTAGAAGGGAACAGAGAAGGAGGAACAGACCTTCGCCTGGCCCAAAGGATGAGTCTTGGGGGGTCAGACACAATGTTGAAGGGAGCAGACACTTCAGAATCTGGAGCAGTCATACGTGGAAACTATAGACTGGGACTTAGCAAAAAGTCAAGCCTGTTCAGCCACCAGAAGCATCATGTGTGCCCTGAATGCGGGAGAGGCTTTTGCCAGAGATCAGACCTTATCAAGCACCAGAGGACACACACCGGGGAGAAGCCATACCTGTGTCCTGAGTGTGGGCGTCGGTTTAGCCAGAAGGCCTCCCTCTCCATACACCAGAGGAAGCACTCGGGGGAGAAGCCGTATGTGTGCAGGGAATGTGGGCGACACTTCAGGTATACATCCTCTCTCACTAATCACAAGAGGATTCACTCCGGGGAGAGGCCCTTTGTATGTCAGGAGTGTGGGCGAGGCTTTCGCCAGAAGATAGCCCTCCTTCTACACCAGAGGACGCACTTGGAGGAGAAGCCCTTCGTGTGTCCTGAGTGTGGGAGAGGCTTTTGCCAGAAGGCATCACTCCTCCAGCACCAGAGCTCACACACAGGGGAGAGGCCCTTCCTGTGCCTTGAGTGTGGGCGTAGCTTCAGGCAGCAGTCACTCCTCCTTAGTCACCAGGTCACACACTCAGGAGAGAAGCCTTATGTCTGTGCTGAGTGTGGGCACAGCTTTCGCCAAAAGGTCACTCTCATCAGGCACCAGAGGACACACACAGGGGAGAAGCCTTACCTGTGCCCCCAGTGTGGGCGGGGTTTTAGCCAGAAGGTCACCCTCATTGGACACCAGAGGACACACACAGGGGAGAAGCCCTACCTGTGCCCTGATTGTGGGCGTGGCTTTGGTCAGAAGGTCACCCTCATCAGACACCAGAGGACACACACAGGGGAGAAGCCTTATCTGTGCCCCAAGTGTGGGCGTGCATTTGGCTTTAAGTCGCTCCTCACCCGACACCAGAGGACACACTCAGAGGAGGAGCTTTACGTAGACAGGGTGTGTGGACAAGGACTTGGCCAGAAGTCACACCTTATCTCTGACCAAAGGACACACTCAGGAGAGAAGCCCTGCATTTGCGATGAATGTGGGCGCGGCTTTGGCTTTAAGTCTGCCCTCATCCGACATCAGCGGACCCATTCTGGGGAGAAGCCGTATGTCTGCAGGGAGTGTGGGCGTGGCTTTAGCCAGAAGTCTCACTTGCATAGACACAGGAGGACCAAGTCTGGTCATCAGCTCCTACCCCAAGAGGTCTTCTGACCTTTCCTTTCCCCGTGAGTGTGAAGCTGGCAGAAATCACTAGTAAATGCTTCAGTTTCCTGAAATGGAATGGAAAAAAAAAAATGTTGCTTTCTTTCATCGATCATGAGATAGTTGATTTTTGGTTTACTTTCTATATTCACAATTTGTCTTGGCTTGCTAGGGGTTCCATAACAAAGTACCCCAGGCTGGGTGATTTTGACAACGGAAATATATTTTCATATTTATGGAGGCTGGAAGTCCCAGATGAACGTATTGGTAGGTTTGGCTGCTGCTTAAGCCTCTCTGTTTGGCTTGCGGATGGCTGCTTTCTGGCCACGTCCTCACGTGGGCTTTTTTCTGTGTGTATGCTTTCCTGGTGTGGCTTCCTCCTCTTCTAGGGACACCAGTCATTTTGGATAGAGCCACAGCCACATGGCCTCGTTTAACCTTAATAACCTTCCTAAAGGCCTTATCTCTAGATACAGTCACACTACACAGTTAGGACTTCAACATATGAATTTCTGGGAAACCCAATTTAGTCTATAACACTCCACTACCAAAGTTCAGGTCCCTCAGACATTCAAAATACATTCACATGATCCCAACAGTCCCAAAATTCTTTACCCATTTCAACTTCACCTCTAGATCCAAAATCTCATTTAAATATCATCTAAATCAAGTGTGAATGAGACTTTAGGTACAATTCATCCTTAGGCAAAATTCTCCAGGTGTGATCCTGTGAAACCAGACAGATATCTGCTTCCACAATATTCTACAATGGTGGGACAAGCAGAGGCTGGACTTCCCCATTCCAAAGGAAAGACATGAGAAAGAAATGAAGAATGATGGATCCCAAGCAAGTCTCAAACCTGGCAAGGCAACTTCCATTAGATTTTAAGTCTCGAGAATAATCCCCTTTGGCTCAGTGCTCTGCCTTCTGGGCCAACTGGATTGGCAGCCCTGCTTTTTAGGCTCACGGGAGCTGCAGTGTCGCTCCCTTGGCCCTTGGCAGCGGCTCCTGGCCCACTGAAATTGAGGAGGAGACACACTTGCCCTCTAGACCTGTACTCTCTGGGCCCATTAGAACCTTTGAGAATCACATTCTTCCCTTTTCTTGAAGATTAACGTGCGTTTGCAACTGGATAGCTCTATTGTACCTTCCCGTAGAATCCCAGAAGTCTAACAGCCTGCCTTCATTTTTGTCCTGTCTCTTTCTCTATTCAGTTCAAGCTGGCAGCATTTCTGGTGAGATGGTTAATTGGTTCCATTCAGACCTATACTAATCTCTTTATCACATGGTTGTCCAGCCACACCCTAGTGTTCTTTCAAGAACATACTTTCTCATTTTTTGCAATGCGGACAGGCTGAGAATTTTCCAAATCTTTAAGTACTGGTTCTTTTTTGCTTAACAGTTCCTTCAATTTATCTTTCTCCTCTAATATTTTACTATAAGCAGCAAGGAGAAAACAGACTCCACTTGCATCACTTTGTGTAGAAATATCACCTGAATATTCTGCACTGCCTCACTCACAATTTCTGTACTCCACAAAACACTAGAACGCAATTTGGGCAAGTCCTTTGCAAGGATTCCAGTTTCCCATTACCCATTCCTCATTTCTGTCTGAGACTTAACCACAATCACCTTAAAATTAAAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000175787-ZNF169:NM_194320:4
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.449 A=NA C2=0.226
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.0)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)