MmuINT0178668 @ mm10
Intron Retention
Gene
ENSMUSG00000050954 | Zfp169
Description
zinc finger protein 169 [Source:MGI Symbol;Acc:MGI:1915161]
Coordinates
chr13:48491356-48498418:-
Coord C1 exon
chr13:48498323-48498418
Coord A exon
chr13:48491394-48498322
Coord C2 exon
chr13:48491356-48491393
Length
6929 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TACTGCTTTCTCTCTAGCAGAAC
3' ss Score
7.47
Exon sequences
Seq C1 exon
GAATTGCCTTTTCCAAACCAAAACTCATCACGCAGCTGGAACAAGGGGCAGAACCCTGGAGAGATGGCAGCGGATGCTTTCTGGACCTTTGTCCAG
Seq A exon
GTAAGAGGGAGACTCTGGGCAGGTGAGGTTATGAGGCATTGGGGGGGGGGGCTCCCTCAGATAAGGGACCTACTCTGACATGCTAAGGGGAGCTCTTCTGTAGGCCTTCCGGGGCTCCAGGTAAGGCTGGGTAGCACTGCCTCTCTCACTCCCGCTCACAGTTGCTAGGAGACGGTCCAGCCCCGCAGAGGGCACCTGATTGGCTCCCTCTCACAGTTGCTAGGAGACGGTCCAGCCCCGCAGAGGGCACCTGATTGGCTCCTGCAGTTTATTTAGGCTTTCCTCCCATGTCCTTGCCGGTCTTGTGTTTGATCTTAAAAACAGTGCCACCCTTCTAGACCGACTAGGCTGTTCCTGCTGAACGCTCTTCATTTTCTGTATTTGACCCAGAAGCTGCCGCACATCTCAGCCAGCCTGTAAATCCCCACAGCTTTGCTTTATAATTCACGTGAAGAAGTACGTTAATCTGACAGCCCCCAGGGGCTAGGAGCCCATTGTCCACCAGGGGGCAGGCTTGTTCATCCTCAGACTGTTCAGCTTCCCCACCGCCTTCTGTGTTCACAGTCTATGGCTACCCCTTTTATCTGACCCCGTGGGTCCTTCAGCATACCACATTATTTTGCACGTTTGCAAACTTCTCCACACATAGTATGCAGCCCCCAACCCCTGGCAATTAGGTAGTGTTACTCTACATTTGTGTGACACTGTGGAAGGATGCAGGAACCATTGGTAGGATTGAAATAGCTGGCCCACAAAGAGGCGTGGCTTTGAATGGCTAAGCTATGCCAAACTGAAGGAGGTAAGAGCACGTGCCCCAGGGCAGTGTGAGAATTCTTCTAACACATCCTTACCAACATGGGGACTGTCTGACCCCATTCCCCATCTTCTTGGAATCGCATGGGGTCTTAGGTGGCTAATGTGAATATCTTCTCACATGATCTGTCCCCTTCTGAGAGTGATGGACTGCTTTAGACATTTGCCCACATTGTAGTTAATTTTTCTTCTGTTATTGATCACAGTTGTGGACTTTCCCCCAAATACTTAGGTCTTTAATTCAACTCACACTAATTTTTATGATTATTAGAATGTACAGATAAATTTCTGCCTGGCTTATCTTTTTCTTTTTAATGAATATATCTTCACTGTGTAGCTCTGGCTGGCCTGGGACTCCCTATGTCGATCAGGTTAACTTTCCACTCCCAGAGCTTTGCCTGCCTCTGCCTCTCGAGTGCTGCTGAGATTAAATGTGTGTGGTACCACATTCTTATTTTTATTTTATTTATTTTCCTTCTAAGTAAACCATATGGGGGATTTTATGCTTTATATCAAACATAGACTTCATAAAAAACATTATATAAAATGTTATTTAGGTATGAGGTATTAAGAAATGAGGGATGGTTTTAAGGTAGAATAAACTGTGTTAAAAGTAAAAATCAGTAAGTTTTGTTATAACTGAAACAGTGAGCATATCAAGATCCCCAAACTTTGCATATACCTTACCACAGCTTCTACCTTCCAACTTCCTGCTCTCTTTTCTTTTTTTCAAAAGTAGAATATTTTATTCATTTTTGAAAAAATAAAATTAATTTTATTAATCCCCTTTGAGAATTTCATGTATACATACAATGTATTTTGATCATATTTACACTTACTTCTTTCCTCCACCACACAGTTCCCAAAGTCATGTCTTCTTTTTCTTTCTTTTTAAAAATAGCCCAGTGAGTCTTTTATTTTGCCCATGTATTCATGGATATGAGGCCATTCACTAGAGTGTGGTAGACCTACCAGGGCCTCACCTTAAAGGAAACCAATTTACCCTTCCCAAAAATCCATCAACTGTCAATAATATCTCCTCCTTTCTAATCCATTTTTCCTGATTATAGATGTGTCTAAATTTCCTAGAATATATGTAAATTGATTCACACAGGATATAATTGTTTTCTCTATTTAGCATAATTACTTAGAATTTTATCCATGGGCTATACATCAATAATTCATTTTTGTTGGCGAGTAGAATTACATCATATTGATAAATTATGATGTGCTTAACTACTGACTTGTATCTGAGTGTTGGGCATAAATAGGGTGTGTATTTCTTTTATCTTCTTTCTTTTTTTTTTAAAAGAATTATTTAGTTAATATACATGAGTACACTGTAGCTGTCCTCAGACACACACCAGTAGAGGGCATCAGATCCCATTACAGATGGTTGTGAGCCACCATGTGGGTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCCGGCTCTTAACCACTGAGCCATCTCTCCAGCCCTGGATGTATATTTCTTATAGGGCCCAGAGTTTCTTAGCATGAAAGCCAATTCAGCATAGAATAAAAAACCACCACCCTTCATACCAAGAGCCAGGAAATTACAACTTGAAGGTGATGGTAACATACAGCTGAGGTGGTAGTGGTGGTATCAGAGATTAGAATTACCTTTCAGGGCCTGGTGGATGCAGGACTGTGAATTTATCACTTGGCTGAGGTAGGAGAACAGCAAGAATGGCAGCCTGGTTATAGAATGAGTTCAAGGTCAACCTGAACAACTGTGAGACCTTCAAAATAAAAGGGATAGAGCATTTGCCTAGCATGAACAAGGCCTTAGGTTCAGCCCAGGGTTTTCAACCTATTACATATACTCTTGAAACAAATAAAAGAGTATATAAAAATATCAGCAAAGAAATATTTTATATAAAAATTAGCCTGCACTTGTGTTACTGAACTTAGCCTATAAAAGAGTATATAAAATAAAAGTATATAAAAAAATAAGTAAAAGTATATAAATAAAAGAGTATATAAAAATAAATAAAAGTATATAAATAAAAGAGTATACAAAAATATCAGCAAAGAAATATTTTATATAAAAATTAGCCTGCACTTGTGTTACAACAGAAAATCTGAGCTCATTGGATGGGCTTAGCTATAGAGTTGGAATGATAGGATGGAATCAGTAAGTTTGTTTTATGTTTTAAGACAGAGTTGCACTCTGTAGCCCTGTCTGGCCTTGATCTCATAAGGATACTTGCTCTGCCTCCTGAGTGGTGAGATTAAATATGTGCAACACTACATCTGAGTGGAATCAGTGAACTTGATTCCAGAACAATAAAATATCATAAATGTGAACAAAGAAAGAAAATAGCTTGAAAAAAAGAATGGTTTCAGAGACTTGTGGGAAAAGAAAAAGAAACAGCATTTATAATCATCAGAACCCAAAAAGGATACTGAAAAATATGGTAAATCGTGGTTGAAAACTTATTAAAAGATAAACATATAGACACAAGAAGTCATAGAAACATTAAATAAACATATGCATAAACATGAAGACACATGATAACTACAATTCTGGAAACTAAAAAGAGGGGAAAGACCTGGAAAGCAGCCAGTGGGGATAAATGCCTTGCCTATAGAGGATTTTCCATGTGAACTAACTAGGCCAATGAAGACATGGCAGGGATTTTTCTCAAGCACTGAAAGGACTGTAAATTTTATACCTAGCAAAACTATCCCCGAGAAATGAAAGTGATTCATTGATACTAATAGAAATAAAGAATTTGTGACATATGTTAAACTATAGGTAAAGAAATTATTCAAAGAGATAGAAATGGTGAAAGAGGTAATCTTGCTTTTATCCCCAGTATCAAAAACCAACCAACCCCCCAAATCACAGCAACATCAACAACCAACCAAACCCCTAAATCACCACCATCACCACCACCACCACCACCACCACAACAAACCATTAAAAAAAGAAGTTGTAGAGCAAGAACATTAGAAAGAAAAAAAAAATGATTTTAAGAGTACAAATATGGCTCTACAGTAGAATGTCCTTTACGTCTAAGATTTTTGCAGTCATATTGATGATTAAATCAAGTTTTTAACCTTAACTACAATTTCTTTAAAAAGTATGACAAATGCCTGGTGGTGGTGGCACACGCCTTTAATCCCAGCACTTGAGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGACAGTACTGTCCAGGACAGCTAGGGCTACACAGAGAAACCCTGTCTCAAAGATCCAAAAAAAAAAAAAAAAAAAAAAAGTATGACGAATAAGAATATAGAAGATAATAAAACCTTAAGAAAGGTAACATTTTCTGTACTTCAGGTGGTAAAATATCAATAGGTATACTGGGGTACCTCCCCTTTGTGGGCTTTTCTTTGTGCCTTGCATGTTAGGTTTAGAATATTTCTATTCTACCATTAACAGAAGGAAGAGAAGGGGGTAATGTGCACCCCCTTCACAACTAAGAAGACAAAAACCATTAATTTTTGAGGCTCACAAATAATCCTCTTGGCCTCGATCTGCTCTTAGGCTCACAGGGCCAATGGCCAGGTCCCCCACCAACTTGTAGCAGGGATTCCATTCCCAGAAGTCTGTCAAGCCCCATCCCATGCCATCAGCCAGAAGGAGAATACCTTCTCATAACCACTGTGGTCCCCTTGCTCCCATGGTTTGTGGGCTCTGCCTCTGTGGTGGAAGTGACATTGATTTGATTTGGGCCATTCTCCACTTTTTTGAAGCACGGTGCATGTTTACATCAAAACAGCTCTACTAAAATGAAAGCGAACTACTGAACCACATAAGCGAATAGACCATTCTTAAGAGATACAAGTGAGCAGTAAACGTGTGAGGAAGTGCTCAACATCTGTAGCCACCAGGAAGCTGCCAATTAAAGCTGCTGTGAGATTCCATCTCACCCCCATCAGAGTGGTTATCATCAGGAAAACAAACAAACAAAACCCCTGCAAATTCTAGTGAGGATGCAGGGAAAAGGAGCCCTTCTACCCTGCCAGTGAGGATATAACACATACAGTCTCTATGGGAATCAGCATGACAGGTCCTCAAGAAACTAAAAATAGAACTGCTAAATGACTCGGTGACTCAGCTATGTCCCTCCTAGGCGTATACTGAAGGGATTTGCAGGCAGCTGGGTGCTAAGCAAAACAAGGCAGAGTCAGAAAGACAGTGCATGTTTTCTTCTCATATATTGGAACCTAGATTTCTCTCCCCCCCCCTCTCTTCTCCTCCCCCCCCCCCCCCCGCCCCGGCATAAGCCGAGAAGTTTCCTTAACCATTCAGTGAACTTCTTGCATTTTCAAGTGGTAAGGTCAGTTGAGCTGCAACTGTGCTGGTTTGCTTAAGAAATCTCAGCTAAGCATTTCACCGTGCATGAGCGATACTCTTCCACAAAAACTGGAGTACAGCTCAGAAACTTGTTTTGCATGTTTCCTACCAACACTCCCTTTCATGACAATCTAGGCCCTTTTTAGCGTGTATATCACAACTCTCCAGTTCTGAAGCAACTGTCACGTTTTTTCACGTGACCAAAACATCTACTTTGTTGGTACCAAAAATCTGTTCTTCAGAAGGAGAGCGGCAGTACCAGTAGGGTGGAGGTGGTCCTAACATAGTGAGGAATTCATTCACACGGTTTCAGAGGCTGACAATCCTCATGACTTGCAGCCAGCAAGGTGGAGCTCTGCAGGGACTGACTCAGGTCCAACCCAAAGGCTTGTGGGCCAAAGCTTTTGCTTGAGTTGGGGAACTGAGGAACTATTTCTAAGTGGGAAGGTCCTAAGAAGCGTTCCCTTACTAGGGGAAGACCAGTCGTTAGTCCTATTCAGGCCTGTGCCTGATGGCATGAGAGTCACTGATGTTAAAGAAGACAAGCTCAGTTGCTTTCAGTTTAAATTTGCCACACTACTACTACTCTGCCAAGTGAATTATACAGGCAGACATCTTTATTAGAGGCCTTGCCTCCAGTAAGGGCAGTGGTCACTGTGCTTAGGTCAGTCACCACATTAACACAAGACACACAACAGCTCCCCTGCTGCTGAAGACACATAAAAAGATGCATGGTAAATGTGATTAGTTCTTATGAACAAGTGGGAATACTGATAAGACAAAGCCTGGGTATCTATTTCTTCCTTTCAAATCATAGGCAGGGAGTTGGCAGTGCATATTTAAACTTCAGCTGTTGAAAACTCCAGAATTACAGAAAGCGTGTGTATGTGTGGTGTATGTGTATTGTTTGATGGCTAAATATTGAACCCAGGGCCTTGTTTATGCCAGGCGTGTGCTCTGCTACTGAGCTGTAAATAGCTGATAGCTAGAAATGCAAACAACTGCCAAGAGTCCTGTTAATACCGGCAAACTAGCTTACCAGAGCAAATCAGAGTCTAGCGAGCCAGTTTAGAACACATTTCCTGATGAGAAGCTGACCACAGTAGGACCTTTGGTGTCCAGCTCTGGGTACCAAAGCTTTGGGCAGCCACGAGGAACAGCATTAGTAATTGTCAAGAAGTCCATTCAACGAGCAGGGATTAATTCGGTCTCAAGAATCAGATTTCTTTAAGGGCTTATAGTTGGAGTCCATGACATCCTGCTTCATTGCCGAATCCCCATTTTCTGATAAGAGAATCCCAGCTTATTTTCTTGGTTTGCTTTCTGGATGAGGGAGCATTCAGTTGAATACCACAGATGGACCTCTTGACATTATTTGGTACTGCCTCTCCCATTTGGGGGATGACTTGAAACTTAGTCACTTCCTTATAAAAGAAAGAAAATCACTGAAGAATCTTGTAATTCCTGATAGAGTAAAAGCGAGTATTCATGGACGTTCACACCACGATTAGCAGTTCTAGTTGTAATAGCTTACAGAGCATACATTACCCATAAGGCTTTTCAGTGTTTTAGTTTTCCTTTCAGAGCTGTGGGAAGGCCGTTTTCAGTAGAGTGTGGAAGATAGACCTGTAAAGGGAGTATTTATGAGCATCTGAGGAATCACTGTTGGGGAAATGTTCCTATCCACAAGGCACCTCTGTGATTCTGACTACTGCTTTCTCTCTAGCAG
Seq C2 exon
AACCCAGGACAGAATTAGAGCCCTCTCTTTCGTCCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050954:ENSMUST00000176176:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=NA C2=0.148
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types