HsaINT0186451 @ hg19
Intron Retention
Gene
ENSG00000170260 | ZNF212
Description
zinc finger protein 212 [Source:HGNC Symbol;Acc:13004]
Coordinates
chr7:148949797-148952700:+
Coord C1 exon
chr7:148949797-148949886
Coord A exon
chr7:148949887-148950649
Coord C2 exon
chr7:148950650-148952700
Length
763 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
GGTCTTCTTCCACTTTGCAGCAG
3' ss Score
6.99
Exon sequences
Seq C1 exon
AGGTCCTTGGCCAGACAGAGGGAGAAGCGGAGTTGGGTACAGAGATGCTGGGTGACTTGGAAGAGGAAGGTCCTGGTGGTGCCCACCCAG
Seq A exon
GTGAGTGGCTCTGGAATATTCTGTTCCCCTTCCATAGCCCTCTGTAGCCTAGAGTGAGCTTTCCCACGGCTGAAGTGCCAGGTGCTGACTTGGTGACCTCATCTGGCATCTGCTTGTTCTGGACTCCTTTATGATTGTCGTTAGTTCAGCTGTTACATATGCCTCAACTCCTACCACCCTGTGGGGTCTTTAAGACTAACGGCCACATCAATCATTATTCTTCATGCCCTACAGAATAGAGTACCGTACGAGGCGGTAGTCAAAACCTGCTGGAGATTGAGCGTAGGTATGTCAGAGCTTCAGGAGGGAAGGCAGTGCAGGAAAAGCACTTGTCAGTAGGTAATTTGGGAGGTTATGGAGGAAGAACAGAGCTGGACATGAATTCTTAAGCTGTAGGTTTAGTTTGTCTTTAATCATTCAAATTTGTTATTTTAACACTCTTAATTGAGTATAGTTGTTACAGTGTATTCTGTCATTTTTCACAGGGATTAAATATAAATTTGTAGACAAGCTTGGAGAACTATCATTTACAGTATTGTTTTATAAGAGTAATACATTTATATTTCCAATCAACATTGGAAAAACTGTACATGAATATAGTTTTATAGAAGTCTTGGAACCTAGCCAGTGTCATCCTCCTCCACGTTATCCTAATTCACTTATTCCTGGGGTGCTTCTGAAATTCACAGATGTTTGTTTGGTCCTGAAGAAACCAAAGGTACTAGAATGTGATCTTTTTTGTTGGTCTTCTTCCACTTTGCAG
Seq C2 exon
CAGGTGGGGTCATGATCAAACAGGAGCTACAGTATACACAGGAAGGCCCTGCGGATCTTCCTGGAGAGTTCTCATGCATTGCTGAAGAGCAGGCTTTCCTGAGCCCAGAGCAGACCGAACTCTGGGGTGGTCAGGGCAGTTCTGTCCTCTTGGAAACAGGTCCTGGGGACTCTACTCTAGAGGAGCCTGTTGGTAGTAGAGTTCCTAGCAGCAGCAGAACTGTGGGCTGCCCGAAGCAGAAATCTCATAGGCAGGTACAGCTGGACCAGGAATGTGGGCAGGGCCTGAAGCTGAAAAAGGACACTTCCCGCCCCTACGAATGTTCTGAGTGTGAGATCACCTTCCGCTATAAGCAGCAGCTGGCCACACATCTGCGCAGCCACTCTGGGTGGGGGTCTTGTACACCTGAGGAGCCAGAGGAGAGCCTTAGGCCCAGGCCACGGCTGAAACCACAGACCAAAAAGGCCAAGCTGCATCAGTGTGATGTGTGCCTGAGGAGCTTCAGCTGCAAGGTGAGCCTGGTGACCCATCAGCGTTGCCACCTGCAGGAGGGGCCCAGTGCCGGCCAGCATGTCCAAGAGAGGTTCTCACCCAACAGCCTGGTTGCCCTGCCTGGCCACATCCCTTGGAGGAAAAGCCGGAGTTCCCTCATCTGTGGTTACTGTGGCAAGAGCTTCAGTCACCCATCTGACTTGGTGCGGCACCAGCGCATCCACACGGGTGAGCGGCCCTACAGCTGCACTGAGTGTGAGAAGAGCTTTGTCCAGAAGCAGCACCTCCTGCAGCACCAGAAGATCCACCAGCGGGAGCGGGGTGGGCTGGCCCTGGAGCCCGGAAGGCCCAATGGCCTGCTTTAAGGGTGCAGCCCCTCGCCCGTCTGGGGGATGGAGGGGGGTGGCATTGGTTCCCCCGAAGAGACACTGCAGTCAGGGACTGAGTTCTTCCTGAGGGCAGTTGTTTGTGATTGCCTTCCCTTGTCCCAGTACCAAGCCAAGCCCAAAGGCTGTCCTGAAAACCCTGTGGAAGAAGAGTCCAGGCCAGGTCTTCATCCTGCTGCCAAGTTTGCTGTTTCTTGGCACCTTCAGGTCTCTGGTTTTCTCATTCATGCCAATGCTTGTGGGCTGGGGTTGGCGTTCTGACCCCACAGGGACTGGTGGCTGGTTCCAGGGCTCGTCCCGGCATTTCATGTCTTCCCACGGGGTTGAGTCGGGCCATAGGGGTGAGCAGCTGCCTGGAAGAGTTCTGGGAAGTATAACCCTCCATTTTTTCTTGTTTTATAATCTCTTTGTTTAATAATAAGTAGAAGAAATAATTTAAATGAACTGCTTAGCCCTGCTCTGAAGAACCTTTTTTGGAATTAGATTTTAGTTGATTTTTTAAAGAATACAGCCCAACACTTGTTTTTTACATTTTAAGAGTTGTAGAAGTTGTTCCTAACTTGGGGACTGGACCTACCCTCTAGGAGGGAGTTGTTAATGGGGCTCTTTTAGCCCACTGATGCTTACTTAGGCCGGAGAGCAGGGGACACGGTGCTAGGTTCCCTCGTGCAGTGCCTGGTGCTCTCAAATTGTCTCAAAAGGACCAAGAGGAAAAGAGTCGGAGGGGTAGACCCTGCAGCCCTGTTGAGAAGAAAGATTCCAGTGAAGTTGCTGATGGTATGGCTGTGGTCTGGGACTTGCGGTGTCTCGGCATACCCCTCTCCTCTTCCCACCTCCTCCTGGCTATGTTCTGCAGCCTCCCAGAGTAGAAAACTACTTTGTTACTTAAGGTTGTTCACCTTGTACCAGTGGTTATTTGAGTTTGTTCCTATTACACCAATCCTTACTTGAGGTGGTTCGGATTACAGTTTCCAAATGCATTCTGGGATTGCCTATTCCAGAGAGGGTACAGAAAAAGCACACAGATGGCTTGTCTCAGGAGTGTTGAATGTGTGCCCCGCTGCTGTCTGGGGGGATGGGAGTGGGCTCTGGGGTCATATGTGAACATCCCCTTGGATGATTTGCGGTTGCTTAGAATAAAACTTGCTACTAGCAAAAGAAAAAAAAAAAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170260-ZNF212:NM_012256:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.855 A=NA C2=0.460
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=8.0),PF139121=zf-C2H2_6=WD(100=9.4),PF134651=zf-H2C2_2=WD(100=9.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGATGCTGGGTGACTTGGA
R:
CCTTTTTCAGCTTCAGGCCCT
Band lengths:
350-1113
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)