MmuINT1035509 @ mm10
Intron Retention
Gene
ENSMUSG00000052763 | Zfp212
Description
Zinc finger protein 212 [Source:MGI Symbol;Acc:MGI:2682609]
Coordinates
chr6:47929050-47932639:+
Coord C1 exon
chr6:47929050-47929130
Coord A exon
chr6:47929131-47930710
Coord C2 exon
chr6:47930711-47932639
Length
1580 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
GTTGGTCTTTTCCCTTGCAGCAG
3' ss Score
9.73
Exon sequences
Seq C1 exon
AGGTCCTTGGCCAGCCAGAGGAAGAAGTGGAGTTGGGTGCAGAGATGGTGGGTGACTTGGTGGAAGAAGGTACCCACCTGG
Seq A exon
GTGAGTAGTTCTAGAATGTTCTTCTGCATTGTTTCTCCATCCCTGTATGGGAACTCTGTAGGTTCCCATAACTAATAGGGAGCTTTCACACGGCTGAACTGGCACGTGCAGGTTGTGGACTTTTGTTTGGTTTTTAAAGGTTTATTTTTATATGTATGCAGGGATGACTATGTGACTGTGTTGGTGGGGGGTGGTTATCCACAGAGGGCAGAGGAGGGCATTGGATTCTCTAGAGCTGGAATTGCAGGTGACCGTGAGCCACCTGGTGTGGGTGTTGGAAACAAGTGCTCTTGTTTAGTGGCCATCTCTCCTGCCTCTGCTTGTTTTCGAGGCAAGTCTTACGATGTAGTCCACAATAGCCTAGATTCTTTGCAGCTCAGGCTGACTTTGAACTCATGATGCTCCCAATTCTTCATCCTGGGAGGGATTACAGTTAAGAACTACCACAACCTTTTTAGGTGACTCTAACAGCAGTTCTCACCTGTGGGTTGTGACCCCTCTGGGGATCGAACAACTCTTTCACAGCGGTCACCTAAGACCACTGGAAAACACGGATATACATTATGATTCTGAACAGTACCAAAATTACAGTTATGAAGTAGCAATGATATTAATTTATGGTTGGGGGTCACCACAACATGAGGAACTATAAAAGGGTCACAGCACTAGGAAGGTTGAGAACCACTGCTTTTTAACTGTTATAGGTCTGCTAGCCTTTGTAGTGGTGTAGATTGTGTAGCATGCTTTGGCATGCACTATAAGTAGTAGGCATAATAGGCTGTGGTCAGAGTGAGAGATGGAGAATGAGTAGTGAGTCACAGAGAGAGAGACACTAGGAAAGGCATTTGAGCGGAATATCCAGGAAGAAAACTGGCTATGTGATCATTGTATTGTATTATCTGTGTATGAGTGCTTTACCTGTATGTAGGCTACATGCTTACAGCAAAGAGGTTATCAGGCCCCTTGAAACTGGAGTTACTGATGGTTGTGAGCCACCATGTAGGTGCTGGGAATTGAACCTGGTCCTGTGCAAGAACAGCTGGGACTCTAACTGCTGAGTCATCTCTCCAGCCTTGGATGTGATTTTTAAATTGTATGTTTAGTGAGTTGAATGCAGGGCCTTTCGCTAGGTCTGCATCTGCAGCTGGGCTTCATTCGCAGCCTCTTTTTTAAAAACCTTTTTAAATTTTTCAGATAGGGTCTGAGTTGCCCACAGTGGTCTTAAACTCTCTTTGTAGCCTAAGCAATCTAGTAACTTGTGATCCTCTGAGTAGCTGAGATTATAGGCCTGAATCACCAGGCTCAGGTTCAAATTTGTTACTTTACCAATTTTGAATTAATCAGTTGTTAGTGTATTTTGTAATTTTTTTCCACAGAGATTAAGTACCAGTTTGTAGACAGGGATGGAGAAATTATAACAAAGTTGTTCTCTATGAGTAAGCTACTCAGATCTCTTCCAGATGGTTCTCATTCAGCTGTTCCTAAGGAGTGTTGATTTGAGCCTTCTAAAGTCTGCAGTATTTTCTCTGGAGATACAAAAGTGCTGGAATGTGATCTTTTGTTGGTCTTTTCCCTTGCAG
Seq C2 exon
CAGATAGGGCCATGGTCAAACAGGAGATGCTGTACAAGCAGGAAGGCCCTGCAGGTCTTCCCAACATGTTTTCCAGTGCAGTTGAACAGCAGGCTTTCTTTGGCGCGGAGCAGGCTATGTTCTGGAATAGTCCAGGAGATTCTGCCCTCTTGGAATCAGGCCCTGGGGACTCAAACCCTGAGTCTGTTGAGACCAGTAGAGACCCTGCCCCTGGTAGAAATCTGGACTGTCCCCGAAAACAGAAGTCTCACAGACAGGTGCAACTGGGTCAGGAGTGTGGACAGGGTCTGAAGGTGAAGAGGGACTCCAGCCCGTACAAATGTCCCGAGTGCCAGATCAGCTTTCGCTACAAGCAGCAGCTGACTGCACATTTGCAGAGCCACGCGGGCAGGGAGTCTTACTCTGCCACAGAACCAGAGGAGAGCCTTAGACCCAGGCCCCGGCTGAAACCACAGGCCAAAAGGTCGAAGCTGCATCAGTGTGATGTGTGCCACAGGAGCTTCAGCTGCAAGGTCAGCCTGGTGACCCACCAGCGGTGCCATCAGCAGGAAGGCCCCAGCACCAGCCCACAAATCCAGGAGAGATTCTCACCGAACAGCTTAGTTGCTTTACCTGGCCACATCCCTTGGAGGAAAAGCCGGAGTTCTCTCATCTGTGGGTATTGTGGCAAGAGTTTCAGCCACCCATCAGACTTGGTTCGGCACCAGCGCATTCACACGGGTGAGCGACCCTACAGTTGCCCTGAGTGTGAGAAGAGCTTTGTCCAGAAGCAGCACCTCCTGCAGCACCAGAAAATTCACCAGCGGGAGCGGGGTGGGCTGGCTTCAGAGTCTGCCAGACCCAATGGCCTGCTTTAAGGTTGCCAGCCCCTCACCGTCGTCCGGGGGCGGAGGGGGGGTGGCGTCAGTCCCCCGAAGACACACTACAAAGTCTGGCTGGCTCCTTCCTGAGGAGAATTGCTCCTGCTTTGCCCTCCTTGGCTGAGCACAGAGGCTTATGTGAGGTGCCGGAGAGAGGGATCTGTGGCCCCAGCCTTTGCCATCTTGGCCTTGTTGATGTGTCTGTTGTTTTGTTAGCGCCTGCAGGTCTCTGGTTTTCTCTTTTCTGGTGCACTGTCAAACCACAGGGACTGGTGGCCAGTTCCAGGGCCCACTCTAGCATTTCACACGTCTTCCCACAGTTGTATGGGGCCACAGAGGTATGTGCTAAGTTCCAGGAAGTATTACCCTCAATTTCTCTTCCTTTTGTAGCCTCCTTGTTAATAACTAGTATAAATAATTTAAATGAACTGTTTAGCTTGTTCTAAAGACCCCCCTTTTGGAGTTAGATTCTTGTTTTTCTTTTTAAATATAGCTCAAAACTTGTTTTATAAATTTCAAGAGTTGTAGAAGTTGTTCCTAACATGGGAACTGAGCCTACCCTCCAGGAGGGAATAGTTTATGGGGCTCTTTTAGCCCACCCACACTTAACATAGGCCAGAGAGCCAAGACACGTTGCTGGCTTCCCTCATTGCTGGCTTCCCTTGGTGGGTTGCTGAGTCCACGCAGGTGGGGCTAATTTCTCAGGTGGGCCAAGAGGAAGCCCCTAAAGCCCTGCTGAGAGTAAAGACTGGTTTGAAGAAGCTAAGAGTTCAGTCCTGGGACTTTAGTGTCCCCTCTCCCCGATGTGTTTCTGCAGCCCTGGGCGAGGGGTGGGGATGAAAGACTGAGCTTGACTCTATTACACCAGGCATCACTTGAGGTTGTGCAGATTAGACTTTCCAGTGGCTGTCCCAGGGATGACGGAGAAGAAGCACAGATGCTAACACAGGAGTGTTAAGTACCTGCCCCACTGTCATTGGGGAGGGAGGTGAGAGTGGGTTCCTTGGTCATATGTGAATGTACTCTTGTCTGGAATAAATCTTCGTTACTTGTATTTAAAAAAGCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052763:ENSMUST00000009411:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.464 A=NA C2=0.498
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF139121=zf-C2H2_6=WD(100=9.4),PF134651=zf-H2C2_2=WD(100=9.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAGATGGTGGGTGACTTG
R:
CCCTCTTCACCTTCAGACCCT
Band lengths:
346-1926
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types