BtaINT0165047 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000389 | ZNF212
Description
zinc finger protein 212 [Source:HGNC Symbol;Acc:HGNC:13004]
Coordinates
chr4:113129563-113131240:+
Coord C1 exon
chr4:113129563-113129652
Coord A exon
chr4:113129653-113130428
Coord C2 exon
chr4:113130429-113131240
Length
776 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
GCTCTCCTTTTTCTTGGCAGTGG
3' ss Score
8.13
Exon sequences
Seq C1 exon
AGGTGCTTGGCCAGCCTGAAGGAGAAGTGGAGTTGGGTGCAGAGATGCCGGGTGACTTGGAGGAGGAAGAGTCTCGTGGTGTCCACCCAG
Seq A exon
GTGAGTGGCTCCAGAATATTCCATGCCCATCCCGCCCCCGGCAGCCTGTTGTGAACTTTGCCACCACCAAACTGCCCCATGCCGATCGGCAGTCACCTTGTCCGGCGTTTGTTGTAAACTCCTTTATGGTTGTCATCAGTTCACCTCTTATACGTGGCTCTTACCTCCTTCACAGCTGCGGGGAGTCCTTAGGACTCGAGGCCACCTCGCCCTTCCGTGTGCCGTACAGGGTAGAGTGCCTAATAGACCTGAGTCAGAACCCAGCGGAGACTGAGAACAGGGTGGGTCATATCCGCAGGAGTGAGGCTCGCTGGGTAAGAGGCAGGAGAAGCCACTGGGAACCAGGTCATCTGGGGAGACTAGGCAGGAAGAACGGAGCTGGATACATGGATTTCTAAGCTACAGGTTTAGGTGTGTGTTTGTTTTATTATTCACATTTATTATTTTAACACTTAACACTTAAAGTAGCTTATGCGTTACCTGTGTTTATCTAGCCATTTTCTACAGAGGTTGAAAGCAAATTTGTGGACAGGCTTGGAGAACTTATAACAGTGTCCTGTAAGCATACTGTATTTAGAGTCCAGTCCAGTCTCTACCTGAGTATAGGTTTAGTTTTTCAGGTCTTGCAAGCCACTCAGTCTCCTCTTTCAGATTGTCCCAGTTCACTTGGTCCTGGGGTACTCTGACTGGAGCCCTTCTGAAGCTTGCCGAGGTGTGTTTAGCTCTGAGACAACCTAGACTGTGATCTCTTTTGTGGCTCTCCTTTTTCTTGGCAG
Seq C2 exon
TGGAGGAGGTCGTGGTCAAGCAGGAGACCCTGTACACGCAGGACAGCTCCGCGGACCTTCCTGGAGAGTGCTCTGGCTTTGCCAACGAGCAGGCTCTCCTGAGCCCGGAGCAGGCTGAGCTCTGGGATGGGCAGGGCAGTTCCATCCTCTTGGAATCGGGTCCTGCGGACACTCGTCTGCAGGAGCCCACTGACGGTGGGAGAGACCCTGGCAGTGGCAGAACTCTGGGCTGCCCCCCGAAGCGCAAGTGTCACAAGCAGCTGCAGCCGGGTCGGGAGTGTGGACAAGGCCTGCAGCTGAGAAGGGACAGCGCTGGCCCCTGCGGATGTCCCGAGTGTGAGGCCCCACACCCGCAGACCCCCTCGGAGCCAGAGGCGAGCCCCCGGCCCCGGCCCCAGCTTAAGCCGCCAGCCCGGAAGGCGCAGTCGCTCCAGTGCGATGCATGCGCGAGGAGCTTCCGCTGCCGGGTGAGCCTGCTGACCCACCAGCGCTGCCACCTGCAGGAGGCCGCCCGTGCTGGCCACCCAGCCCAGGAGCGGTTCTCACCCAACAGCCTGGTCGCCCTGCCTGGCCACATCCCCTGGAGGAGGAGCCGGGGCTCCCTTCTCTGCGGTTACTGCGGCAAGAGCTTCAGCCACCCGTCGGACCTGGTGCGGCACCAGCGCATCCACACGGGCGAGCGGCCCTACAGCTGCCCTGAGTGCGAGAAGAGCTTCGTGCAGAAGCAGCACCTCCTGCAGCACCAGAAGATCCACCAGCGGGAACGGGGTGGGCCAGCCCTGCAGCCCGCCAGGCCCAGCGGCCTGCTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000389:ENSBTAT00000000499:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.774 A=NA C2=0.626
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF054957=zf-CHY=WD(100=37.6),PF134651=zf-H2C2_2=WD(100=9.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCCTGAAGGAGAAGTGGA
R:
CTGCAGCTGCTTGTGACACTT
Band lengths:
346-1122
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]