RnoINT0167860 @ rn6
Intron Retention
Gene
ENSRNOG00000006711 | Zfp212
Description
Zinc finger protein 212 [Source:RGD Symbol;Acc:1307836]
Coordinates
chr4:77600584-77603226:+
Coord C1 exon
chr4:77600584-77600664
Coord A exon
chr4:77600665-77602369
Coord C2 exon
chr4:77602370-77603226
Length
1705 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
GTTGGTTTTTTCCCTTGCAGCAG
3' ss Score
9.27
Exon sequences
Seq C1 exon
AGGTCCTTGGCCAGCCAGAGGAAGAAGTGGAGTTGGGCGCAGAGATGGTGGGTGACTTGGTGGAAGAAGGTACCCACCTGG
Seq A exon
GTGAGTAGTTCTAGAATGTTCTTCTGTGTTGTTTCTCCATCCCTCTGCAGGTTCCCACAACTAACAGGGAACTTTCCCACAGCTGAGCTGCCAAATGCTGTCAGTAACCGCATCTGGTGTGCAGGGGGTGGACTTTGGGTTTTAAAAGTTTATTTTTATAGGTATGCATGGATGTCTATATGACTGTATGGTGTGTGTGCGTGCCGGGGGGTATCCACAGAGGACAGAAGAGGGGATTGGATCCCCCAGAGCTGGAGTTACAGGTAATTGTGAGCCACCTGGTGTGGGTGTTGGAAACAGGTGCTCTTGTTCTGTGGGCCATCTCTCCAGCCTCTGCTTGTTTTCAAGACAAGTCCTATGTGTAGTCCACAATAGCCTAGACTCACTAGGGAGCTCAGGCTGACTTCGAACTCACGATGCTCTTGATTTTACCTCCGGAGTGGGATTATAGTTAAGAACCACTACAACCTTTTTAGGTGACTATAATAGCAGTTCTCACCTGTGGGTTGTAACCCCTCTGGGGATTAAACAACTCTTTCACAGGAGTCATCTAAGACCACTGGAAAACACAGACATACATTATGATTCATAACAGTACCAAAATTATAGTTATGAAGTAACAATGAAGATATTTTTATAGTTGGTGATCACCACCTGAGGAACTGAAAGGGTCACAGCATTAAGAAGGTTGAGAACCACTGCTTTATAACTGTCAGAGGTGTTTCTTAACTCCTGCTAGCCTTTGGAATGGTGTGGATTGTGTAGCATGCTTTTCCATGCTCTACAAGTAGTAGACATAACAAGCTGTGCTCAGAGTGGGAGATGGAGGATGGGCAGTGAGTCACAGGGCCAAGAGAAAGAGACGCCAGGAAAGGCATTTGAGCAGAATATCCAGGGAGAAAAGAACTGGATATTCGATCAGTTTATTTATTATTTTCTGTGTTTTACCTGTATGAGTACTACATGCTTACGTCGAGGGTATCAGGTCCCTTGAAGCTGGAGTTACTGATGGTTGTGACCCCCCACATAGGTGCTGGCTATTGAACCTGGTCCTCTGCAAGAACAGCTGGGACTCCTAACTGCTGAGTCATCTCTCCTGCCCCAGATGTGATTTTTAAACCGTTAGTTCAGTGGGTTAAATGTAGGGCCTTTGCTGGGCATGCATCTGCAACTGGGCTTTATTTGCAGCCTCTTTTATAAAAGACTTTTTAAATTTTTGAGATAGTATCTGAGTTGCCCACAGTGGTCTTGAACATGCTCTATAGCCTAGGCAATCTATTGTGATCCTCTTGCCTTATCTTTCTGAGTAGATGAGCGTACAGGCCTGCATCACCAGGTTCAGCTTCCAATTTGTTATTTTAACTTTTTTTTTTTTGAGCTGGGGACCGAACCCAGGGCTTTGCGCTTCCTAGGTAAGCGCTCTACCACTGAACTAAATCCCCACCCCCAACATTTTTTAATTAATCAGTCATTAGTGTATTTTGTCATTTTTCCACATAGAGATTAAGTACCGGTTTATAGGCAGGTATGGAGAAATTACAATAATGTTGTTCTCTATGAGTAAGATATTCTGATCCTCCTCCAGATTGTTCTGATTCAGCTGTTCCTAAGGAGTTTTGATTTGAGCCTTCTAAAGTCCCCAGTGTTTTCTCTGGAGATACCAAAAATGCTGGAATGTGATCTTTGTTGGTTTTTTCCCTTGCAG
Seq C2 exon
CAGACAGGGCCATGGTTAAACAGGAGATGCTGTACAAGCAGGAGGGCCCCTCAGGTCTTCCCAGCATGTTTTCCAGTGCTGCTGAACCTCAGGCTTGCTTTGGCTCAGAACAGGCTGTGTTCTGGAATAGTCCAGGAGATTCTGCCCTCTTGGAATCAGGCCCTGGGGACTCAAACCCTGAGTCTGTTGAGAGCAGTAGAGACCCTGCCCCTGGTAGAAATCTGGACTGCCCTCGAAAACAGAAGTCTCACAGACAGGTGCAACTGGGTCAAGAGTGTGGACAGGGTCCGAAGGTGAAAAGGGACACCAGCCCGTACAAATGTTCCGAATGCCAGATCAGCTTTCGCTACAAGCAGCAGTTGACTGCACATTTGCAGAGCCACACAAGCAGAGAATCTTACTCTGCCACAGAGCCAGAGGAGAGCCTTAGACCCAGACCCCGGCTGAAACCACAGGCCAAAAGGTCGAAGCTGCATCAGTGTGATGTGTGCCACAGGAGCTTCAGCTGCAAGGTCAGTCTTGTGACCCACCAGCGGTGCCATCAGCAGGAAGGCCCCAGCACCAGCCCACAAATCCAGGAGAGATTCTCCCCAAACAGCTTAGTTGCTTTGCCTGGCCACATCCCTTGGAGGAAAAGTCGAAGCTCTCTCATCTGTGGGTACTGTGGCAAAAGTTTCAGCCACCCATCAGACTTGGTTCGGCACCAGCGCATCCACACGGGTGAGAGGCCCTACAGTTGCCCCGAATGTGAGAAGAGCTTTGTCCAGAAGCAGCACCTCCTGCAGCACCAGAAAATCCACCAGCGGGAACGGGGTGGGCTGGCTTCAGAGTCTGCAAGACCTAATGGTCTGCTTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006711:ENSRNOT00000009054:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.607 A=NA C2=0.558
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF139121=zf-C2H2_6=WD(100=9.4),PF134651=zf-H2C2_2=WD(100=9.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAGATGGTGGGTGACTTG
R:
CCTTTTCACCTTCGGACCCTG
Band lengths:
345-2050
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]