HsaINT0186485 @ hg38
Intron Retention
Gene
ENSG00000159885 | ZNF222
Description
zinc finger protein 222 [Source:HGNC Symbol;Acc:HGNC:13015]
Coordinates
chr19:44027023-44027490:+
Coord C1 exon
chr19:44027023-44027149
Coord A exon
chr19:44027150-44027397
Coord C2 exon
chr19:44027398-44027490
Length
248 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
GTGACTTTGCCTGTTCACAGGGC
3' ss Score
9.03
Exon sequences
Seq C1 exon
GAGGCAGTGACCTTCAAGGATGTGGCTGTGATCTTCACTGAGGAGGAGCTGGGGCTGCTGGACCCTGCCCAGAGGAAGCTGTACCGAGATGTGATGCTTGAGAACTTCAGGAACCTGCTCTCAGTGG
Seq A exon
GTGAGGACGGGCACCCCCTGTAATGGAATGTCAGGCCCCAGGAGTGGTTTTTTAATCCTAGGGTTTTCAAGTTTGAGTGTGCAGTGAGAACCTACATTTCCAGTAAATTTTGCCTGGCTATTAGGTTGGTGCAAAAGTAATTGTGGTTTTTGTCATTGGAAGTAATGGTACACTGCAATTACGTTTGCACCAACATGATATTACCTTGAACATGTTGGGATTAAGCATGTGACTTTGCCTGTTCACAG
Seq C2 exon
GGCATCAACCATTCCATGGAGATACTTTCCACTTCCTAAGGGAAGAAAAGTTTTGGGTGATGGGGACAACAAGCCAAAGAGAAGGGAATTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000159885:ENST00000391960:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.109
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCAGTGACCTTCAAGGATG
R:
CCAAATTCCCTTCTCTTTGGCT
Band lengths:
220-468
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains