HsaINT0186485 @ hg19
Intron Retention
Gene
ENSG00000159885 | ZNF222
Description
zinc finger protein 222 [Source:HGNC Symbol;Acc:13015]
Coordinates
chr19:44531175-44537262:+
Coord C1 exon
chr19:44531175-44531301
Coord A exon
chr19:44531302-44535969
Coord C2 exon
chr19:44535970-44537262
Length
4668 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
TTAATTCTGTGTCCTTATAGGAG
3' ss Score
10.48
Exon sequences
Seq C1 exon
GAGGCAGTGACCTTCAAGGATGTGGCTGTGATCTTCACTGAGGAGGAGCTGGGGCTGCTGGACCCTGCCCAGAGGAAGCTGTACCGAGATGTGATGCTTGAGAACTTCAGGAACCTGCTCTCAGTGG
Seq A exon
GTGAGGACGGGCACCCCCTGTAATGGAATGTCAGGCCCCAGGAGTGGTTTTTTAATCCTAGGGTTTTCAAGTTTGAGTGTGCAGTGAGAACCTACATTTCCAGTAAATTTTGCCTGGCTATTAGGTTGGTGCAAAAGTAATTGTGGTTTTTGTCATTGGAAGTAATGGTACACTGCAATTACGTTTGCACCAACATGATATTACCTTGAACATGTTGGGATTAAGCATGTGACTTTGCCTGTTCACAGGGCATCAACCATTCCATGGAGATACTTTCCACTTCCTAAGGGAAGAAAAGTTTTGGGTGATGGGGACAACAAGCCAAAGAGAAGGGAATTTGGGTAAGAACCAAGCAATTGTGTGTCCCTGCATGTGATTCCTGTTACTTCTGTCCATGCCCATTTCCAGCATTTTGGGGTAAATGGCCAAACCTGTTTCCTGGATTATTACAGCCTTCTCCCTGCTGATGCCCCTGCTCCCACCCTTCCCACCCTGCCATCTGTTCTTACGGTAGCCAAAGTGATCCGTAGGAAACGGAAGTCACATTGCCATTCCTCAGCTCAAAGCCTTTCTGGCTTCTTGTTTTTATTAGTGTTACAACCTCTTTAAGTGGCTTTTGTAGACCCTGTGATCTGCCCTTCATCCCACACTGTCTGACTGCATCTCCTGTCCTCTCCCCCTTGCTCCATCTTTTCCAGGCACCTTGTCCTCCCTGCTGTTTCTCTATCCTGCCAAGGACATTGTATTGCCTATTGTGGCCGGTGACATAAAACTCAGCAGACTGAACAAGAAACACTTATCTTTCTCTTCTGTAGGCCTGAAGTCTGACACATCTCACTGGGCAAAAATCAAGTGGTCTTAGGGCTTTGTTCCTTTCTGGATGTTCATGGGGAGAAGACTTCATTTTGGTTTACCAGTCTCTAGTCACTGTCCACACTCCGTGGCTCTTGTTTCCCTTCCTCCATCTTCAAAAGCAGCTACATTGCATCCCTGACCATTCTTCCATAGTCATGCTTCCTCTGCCACTCTTCTTATGCCTTCCTCTTTCACCTTTCAGGTCCCTTGTGATAGTATTCATCACTCCTGGATGATTCAGGATGACCCTCCCACTTTCTGCTTAGCTGGCTAGTGACCTCAATGGCATCTGTAGCTTTAATCTCCCTTGCTGTGGAACATAACGTGTTCATAGGTTCTGAGGACTGGATGTAGACATCTTTCAGGAATGATTATTTTCTCTACTACAAAAGCTTCTGCCTCCGACGCCCTCACTTGCTCTTCTCTCTGATTGGAATACACTGTCCCCACAAAACTTACTGACCCCTCTTTTAGTTTATGCAGCTCTCTGCTCAGTTTTAATATCATGGGAGAGGTCGTCTCCAAGCACCTTATTGAAAATACTATCCTATCTTTACTCTTCTTGGCCTGCCTGTGTTGTGTCTCATGTATTTTTGTCTACTGATAAGTCGCCCCTCCCCTTTGCAATGTAATCTCTTGAAGGCATTTATCTGTTTCTTTATGACTGCATCTTCAGCACCTAGAATACTCCTGGTACATGGCAGTTATCTGTAAATATTTGGTATTCTTATGAATGAATTAATGGATGAGAGGACTTGACTGTCTGTAAGAATCATGGAGATAGCTAATAAGTAACAGACATACAAGAGTGAATGTTATATAGTCATGCCTTGGTAGCCGTGGGGTTTGATTCCAGGACCCCCTTGTGGATACCAAAAGCCAAGGATGCTCAAGTCCCTTCTACATGTAAAGTATTTGTGTATATCCTACACACACCCTTTCATATACTTTAAGTCATGTCTATATTAGGTATAACACCAAACGCAATGCCTACCCATCGCTTTATTCACATGGATTCAATGTATAGGACTCAATGTGAGAAATTCAAGTTTTGCTTTGTGGAACTCTGTGGAATTTTTTTTTTCCAAATACTTCTGATGCACTGTTGGTTGAATCCATGTATGCTGAACCCACAGATATAGAGGCTGACTATATGTTGCAGGACAGTTGTTGGTTTGTTTTGTTTTGTTTTTTTTTTTTTTTTTTTTTTTGTCTGTGCAGGGCTGCTTATCCAATTTTGACTTTCTTAGGTTCTCTTGACATGGTTGGTTTTCTGTGTGTGCAGTTGACCCACATCCCATGGAAACTTTCAAGCATGGTTTTCATGACCACATTGAGAAACATGCCTTCCCTGGGGCTTACCCTTGAGCTTTCCTTAAGGACCGTGTTTATGTCTGTGAGAAATTCTTTATATCTATGAGCTGAATGTTGCTTATATTTCCAAATGTTTTTCTTCAAAAAATGTGTCTATTTCTGCATCTTTATACAAATTTAATTGTCAAAAATGTGAAGGAATATAGATTTTACTGAAATCTTTCTTTATATTTATAGAGATATAGTGTTGTATTTTCATCTGGTGAACTTTATGACCTGAAAGGAATTGGGAAACTGCTCTCAAAATAGAAACCTCCCGAAGGATACTCTCCCTTCTCTTTAAAGACTTATTTATACGTGACAGCATATTAAATATATCCATGTACTACTGTGTACTGAAAGGTACATACTTATCAATTAATATTTTCCAAGATTCTTTCCATTGGAAAAACTTGGAAGTTATCTTTCCATTGGAAAAATGTACCTAATTCAGGACTTGGTAATATCCTGACAAAGTTCTAAACATTTTGTGAGCATTAGCCATAGTAAGAAACATATCTGTCAGTGTAACACGGACAAACATTTTTCATGTGTGTAGATGTGTGTGAGTGGCTTTAGTAAGCAATTCATGTAATGACATTTTTCCTGCTTGTCATAATGCTGCAATAATTTTCATTCTAGTTCTTGTTTTGTAAATGTTTATTGCAGGTTTTAACTTTATTTCAGCTCATTGAGGCATAGTCTTGAGTATAAAAAGTTATAAAGCCTGTTTACCTCATAGACTTTCTTTTCATTCCACGTGTTTCTGAACAACTTTGATTGTCTGATCAGGAGCATCCCCCTTTGTGAACCCCTGGAAGGACAGCCTTTCAGATTCCCCTCAGAACTACAGTTGTCTGTCCCTGTACTCTTTCAGATAACCAAGTTACTTACTATCCATATCAAAACAGAAAAATAAGATTAAGTATTTTTATACATGTGTAAAATTATTGTGGGGGAATACTTTGAAGGTATAGATATTAAACACTCTGAGGTGTTTGGTGTTAACATTGTGAAGAGTTCAACCAACTACGAAGTTTAGTGGGACGTTTTACAGAGGACTGCTCTCACTTCACATCAAGTGAAAATTCGGCAGCTTTTCAAAACTATCTTCATGTTTAGTAATTTGCTAGAAAGACTCTTAGAATTCACTGAATGCTTTTATCCTCACAGTTACTGATTCTTACAGGGAAAACATGCATATTATAGTTAACCAAGAGAGAAACTAAATAAGACAGAGTCCAGGGAAGTACCAAATCCTTATTTTCTATTGTATTCTCCCAGTGGAGTGGGGTATGTTACATTGTCAGGATTAGCATGTGACTTAGACACAGATAACTCCCAATCAGGGGAACTTACCTGAGTGCTGGGGTCCAGAGTAATTACTGGGGCTCCAATTTCATAGCCATGATTGGTTGGTTGATTCCCATGTGGTTGTTTAGTCTCCTGGTTCACTGATTCCCTGTGAGGTAAAGCCCTTCCATGAATCACACTGATGTTCTTTCTGATGTGAGGAGTATCACCCCCCATGCCCCAAAGGAGTGGCCAGTCACAACCCTAAATAATATTGTTTCACTATCCAGAGTTACCCAGGTTTTACCCTCAAGCAAAGAGACTCTCCTCAGGCATGACACTTCAAGATCCTAGAGATTACCTCTCAGATGCTGACGACAACGTCCTGACCTCTTTCAAGTTAGGTTAACTTCTTTGTAAGGATGTATAACAGACAAATATACAAACTGTTTATTCGTTATTGCTTCTCCTTAAAGTTCCTTTGGATTCATATTTCACTACATATGTAGTATTTTAGCTTTATAACTTACCACACAAAATTTTAGACTGACTAAAAAATTCACTAGAAATAGCAACAAGTGAAATGTATATATTAATTTTTTAAATAAGTATTTTATTTCTATCCAGAATTTTACATATGAGACATGGTGTGGTTCTAAATTGGTCTCATGCAAACCAAAAACCAGGGTGCACTTGGAAAACAGAAAAATGAACGTTCATTAAAGTTAAATCCCACATCCTAAGTGTGAAGTCTTGAAAACACTGAACAAAGACTTCACTTGTCCACATGTCTTATTTGGTGTTTTTGTTCGTTTGTTTGTTTCTGTTTTTGTTTTGTTTTGTTTTGTTTTGAGACGGAGTCTCACTCTGTTGCCCAGGCTGGAGTGCAATGGCCTGATCTTGGCTCACTACAACCTCTGCCTCCTGGATTTAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGTTGGGATTACAGGTGTGTGCCACCACACCCGGCTAATTTTTGTGTTTTTAGTAGAGACAGGGCATCACCATGTTGGCCAGGATGGTCTCAAACTCCTGACCTCACAGTCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCGTGCCTGGCCTACTTGTCCACATGTCTTAATTCTGTGTCCTTATAG
Seq C2 exon
GAGGCAAGATCCAAACTGAGATGGAGACTGTTCCAGAAGCAGGAACACATGAAGAATTTTCCTGCAAGCAAATTTGGGAACAAATTGCAAGTGACTTAACCAGGTCTCAAGATACCACCATAAGTAACTCTCAGTTATTTGAACAAGATGACAACCCCTCCCAGATTAAAGCAAGACTATCTACAGTTCACACAAGAGAAAAACCTTTCCAGGGTGAAAATTGTAAACAGTTCTTCAGTGATGTTTCCTTCTTTGATCTTCCTCAGCAGTTATATTCAGGAGAGAAGTCTCATACCTGTGATGAGTGTGGAAAAAGCTTCTGTTACATCTCAGCCCTTCATATTCATCAGAGGGTCCACATGGGAGTGAAATGCTATAAGTGTGATGTGTGTGGTAAGGAATTTAGTCAGAGCTCACGTCTGCAAACTCATCAAAGAGTCCACACTGGAGAGAAACCATTCAAATGTGAGCAGTGTGGGAAAGGCTTCAGATGTAGATCAGCACTTAAAGTTCATTGCAAATTACACATGAGAGAGAAACCTTATAATTGTGAGAAATGTGGGAAGGCTTTCATGCACAATTTCCAGCTTCAGAAACATCACAGAATTCATACTGGGGAGAAGCCATTCAAATGTGAAATATGTGGTAAGAGCTTCTGTCTTAGGTCAAGTCTTAATAGGCATTGCATGGTCCACACAGCAGAGAAACTGTACAAATCTGAAAAGTATGGAAGAGGTTTCATTGATAGGCTAGATTTGCATAAGCATCAGATGATTCATATGGGACAGAAACCATATAATTGTAAAGAATGTGGGAAGAGCTTCAAATGGTCCTCATATCTTTTGGTCCATCAACGAGTCCACACTGGAGAAAAGCCATACAAATGTGAGGAGTGTGGGAAGGGCTACATTAGTAAGTCAGGTCTTGACTTCCACCATAGAACCCACACGGGAGAGAGATCTTATAACTGTGATAACTGCGGGAAGAGCTTTAGACATGCTTCTAGTATTTTGAATCATAAGAAACTCCACTGCCAAAGAAAGCCATTGAAATGTGAAGACTGTGGAAAGAGGCTTGTATGCCGGTCATACTGTAAAGACCAACAAAGAGACCACAGTGGAGAAAACCCATCCAAATGTGAGGACTGTGGGAAGCGCTACAAGAGGCGCTTGAATCTGGATATAATTTTATCATTATTTTTAAATGACATATAAGTTATACATATTTATGGAGTGTGAAATTTGATACATGTATATAATGTGTGCTGATTAAATCAGTTTAATTTCACCTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000159885-ZNF222:NM_013360:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.064
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=5.2)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)