HsaINT0186487 @ hg38
Intron Retention
Gene
ENSG00000178386 | ZNF223
Description
zinc finger protein 223 [Source:HGNC Symbol;Acc:HGNC:13016]
Coordinates
chr19:44055109-44060581:+
Coord C1 exon
chr19:44055109-44055191
Coord A exon
chr19:44055192-44060454
Coord C2 exon
chr19:44060455-44060581
Length
5263 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
GCATATGTTTGATGCTGTAGGAG
3' ss Score
5.4
Exon sequences
Seq C1 exon
GCACAATTCTGCTTTCCCTGGAACTGTGTCATTCAGGACTCTGCAAATTCCCTAAAGTAGGAGGAAAAATGACCATGTCCAAG
Seq A exon
GTAAGTAGGACTTGCCTCTCTTACTGTTAAAATTCCATCTCACTACTCAGATTGTTGTGTGTTTTTCTCTGCCCTGGGAAGACTCAAGGAGAACAGCAGGACTTTGAGGATCTCTTGTCACCTGGCTAATTTTTGTAGTATTAGTGGAGATGGGGTTTCATCATGTTGGCCAGGCTTGTATCGAACTTCTGACCTCAAGTGATCTGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTATAGGCGTGAGCCACCGCACCCAGCCAGAAAGCCTTCATTTAAAATGGCTAGTAATACTGGGCTGGGTGCAGTGGCTCACACTGGTAATCCCAGCACTTTGGGAGGCTGAGGCAGGCGGATCACCTGAGGTCAGGAGTTCGAGACCAGTCTGACCAACATGGAGAAACCCCATCTCTACTAAAAATACAAAATTAACTGGGCATGGTGGTACATGCCTGTAATCCCAGCTACTCGGTAGGCTGAAGCACGAGAATCACTTCAAACCGGGAGGCGGAGGTTGCAGTGAGCTGAGATTGGGCCATTGCACTCCAGCCTGGGCAACAAGAGTGAAACTCTGTCTCAAAAAAGAAAACAAAACAAAAAAAGTCTAGTAATACTGAAGATTGGCCAGTCACTTGTGTACTGTCACTCATTTACTTCTCAAAGCAGCAGAATGAGGAGGTTCCTGATCTCTTCTCCTAAACTCATGAAATATGAGAAACCTGCTCAAAATCAGAGGCAATCAAGGAACAGGAATGTTAGCCATTCTGCTCAAGTGAAAGAGAGAGACGAGAAGAAAGAAAAATTCTCCACTGAGGGTCTGGTGACCTGTTGTGTGGATGTCTGGAGTGCTCCCTTGAGTGATGACATCCATAGGTGGCGCTGCTTCTCCCTGTCCTGCGTTGGTGTGACCTCTTCTTTTCCAGACCTGGCACCTACTCAGGTGTACTCATTGTTCCAAGTACCCAAGGACAGTGATTACCACAGCTGTTCTTATCTCCAAATTCCTCCTTATGGCACAAGATACCTCACACATTTTTTCTTTGGCTGGGCGCGGTGGCTCACACCTGTAATCCCAGCACTTTTTCGGAGGCTGAGGCAGGTGGATCACTAGGTCAGGAGATAGAGACCATCCTGGCTAATATGGTGAAACCCCGTCTGTACTAAAAATACAAAAAAAAAAAAAAAAAAAAAATTAGCCGGGCGTGGTGCGGGCGCCTGTAGTCCCAGCTACTCGGCAGGCTGAGGCAGGAGAATGGCGTGAACCCAGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGAGTGACAGAGTGAGACTCTGTCTCAAAAAAAAAAAAAAAATCCCTAAATTCCTCCTTATGGCATAAAATGCCTCACCATTTTTTTTTTTTTTTTTTTTTTTTTTGAGATAGAGTCTCTCTCTGTTGCCTAGGCTGGAGTACAGTGTTGCGATCTCAGCTCACTGCCAGCTCTGCCTCCCGGGTTTACGCCGTTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCCGCCACCACACACCCGGCTAATTTTTTTGTGTGTTTTTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTGACCTCATGATCTGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAAGCGTGAACCACCGTGCCCGGCCCGCCTCACACATTGTTACCAGAAAAAATGACAACCTGGGGCAAAAATATTTACCCCTTGGATAGTTAAGGAAGAATAAATCCAGAATAAGAATCTTCTAAAAGGATAAAGAAAAAAGTTCAAACAGATTGGAACAAAGAATACTAAAAGGCAATTGTAAAAGAAGAAATAGAGATCGCCAATAATCTTGAAAAGTGGTGATACTCATTTATAATAATAAGTGAGAATGATAGAATGAATTGTTCTTCCTAATCAGATTACAAAACCATGGGAATATTTATAAACTGCTCTTGGCTATCATAAGGAGAATTAGGGTACTTGTATTCTGTTGAATGATTAGAGAGGTAGGGAAAAAAGTGAGAAGAAAGTATGCAATTATATAATGATAATATTAAATGTGCTTATTTTTCACATTTTAATTTTCATATGAAATTATTTTAAATGAGACAGAGTCAGATGTTCTTACATCTTACTACTTACCATATCATCTTGGCCGGACTGATAATGGAAAATATGTGAAATTAAATATTTATTATTTAGTGTAGCTAAAAATAGATCATCAGTTCCCTGGAATACTATGGAACCCTGAAATAGATAATGGTAATAACAGTAATAAGTAATACCAGCTAATGTTCATTAAACAGTCTGTGCCGTAGACTTTTCAAAATACCGTATATTTCTTTTCTTAATTCTTGAAAAAACTCTTGTCATGTAAGAACTATTATTCAGAGAGGGAACAAGCCTTGTAGGAAAACATGTCTGAGGTCACATGGTTAGAAATGGGCAGACTCTCAGAATGTGCACTGAGGCATTCTGGCTTCTGATCAGGACACTAAATGCTGCAATAAGCATATGTGGTTTGTGCCTTGCGAGTACAGAAGACACACTGCATAACTGTCTCAGGGTACCATGGAGCAGGTTCACTGTGCACTGATTACCAACTCGTGTGAGTCCTGTGGGACAGAACACATTCACACGCAACAGATTGCATGAAGCAGATTTATTACTACAGATTGGCAGCAGGCGAGCCCAGAAGCCTAGGGTCCAGTATGAGCTGGCCATCCAGGGCTCAAGAAAGCTACCTGGAGCAGATGGAATCTTGACTGTATGTGCCCCACTTGCACCAGAGCTGAGGCACCCCAGAAGGTAACCTGCCCCCATTTATATACTTCAGGGTGCCATGACTCATGGAGAAAAACTTGAAGGTCATCTTCCTTCCAGGTGAGAGAGGAACAAAGCCCAGACTGTCAAAGGCAGTTCCTCCCCATAATATTGCATTCTTAGAATAATCTACAGTTATTCTTGAGAACTACAAGCAATAAAGGGGAGAGAGCTGGGTGGGGTCTGCACCCCAACTGTCCTGCAGTCCATCCCCTGACCCAGATATCCCTCTTAGCAAACTGGTCCATTTCATATGTCCATCGACCTCCCCTGGCCTCCCCTGATCTTGTTAGATCAGTGTAACACCTTGACTGACACAATCTCTGCCAACTTCATGGAATTATAGCTGGAATACATTCCGTGGACCCCAGAGGAGCATGACCACAAGCAGCACAGCCAGACCTTCCTGAAGTAGTAATCCTGCCCAGGTCCCAGTTATCAAAATAAGAAGCTGCTGAAGATACCAAAGAAGAATCATTCAGGTGGCCCCAGTGTCTGAAGCCAGTGGACCTGCTTCTGGGTTGCCTCTCATTGAGTTTTTACAATAGCTATGTATCCAGAGAAGGCCGGAGGTGTTGGCAGTTGCAGACCCACTCCTCCCAGTAGGGCTAAAAGCACAGAGCACTTGTGTTTTTTGAACCTTCCTGAGGGAGTGAAGGGATGTTGCTGGGCTCCCAAGGCAGTGGCCGTGGAATAAACAGTATCTATCGGCCATTGCCTATGGCAGGTGTCTCATCATTTTTCATGGGAATTCACTTGTAGGTGTAGGACATAAATCTGGAGCTAGCTGCACCTCCAGGCAGGTCCCCAGTCAGCCTGGGGCACAGCTTTAGCCTTCTTGCCCAGTGGTGCATCTCGCTTCCAGGGTGACATCTAGGGGCACCCCCAGCATGCCTAATGTTTGGGATCTAACAGTCTGCCAGCTTTCCAGGCATGACATTGCCCACCCTGTATCTGGGTCACCCTCCAAACCAACCACAGAGAAAGCCATAAGGCTCAGGTGCACACAGCACCCATTCCCTTGTTTGGGTGTTCTGTGACCCATTTGTGGGAATGGGGACATTATCTTTTGCCAGCCACATCTCATTTTTGGCACAGTTGCATAAGGTCAGTTCCCCCAGTATGACATTCATGCGGCCCTTACAGAGAGGAATACCACTCATCCAGTCCTGGTTTTCATTATGTGGAACATTTCTCATCCAGGTAATCAAAGGAACATGGTGCGAGAAAGCACAGTCCACTGTAGCTTTGTTGAGGTTGTGTGATTCTGCTGCCTTACACCAGTTACCACAGGGCCCTCCAGCTCTCTCTCATGTGGCAGGTGCCAGGTTCTGACGTGACAAGCCAGGGTTATGGAGCTGTTGGTGTGCACTGTGGCATGAAGGATGCTGGTGTGGTTTACCATAGTCAGGATGAGAGGGTCACTGTGGTTGGTGATAGAATAAATGCAGGGTAGCAGATGGAACACTTAGCCAGGTGACATGAGGTGACTGCAGCTTGAGATAAGGAATGTGCTGTGCTTCCAGGCCTCTGCTGCCATATCCTTGGGGGAACAGCAGATTAATAGCTGTTGGATAGTGGGTGGGCTGAGGTGGTGCAGCGACCCAGTCTGTCTGTCCCTGTCCTGAGGCTACTACCATTGTAGACATCCATTCCCCTGGTTGTTTGGCTCAGACCTTCCTGCCTCAGTTGTTCAGTCAGGAAGGGACGTCACGTCCTATACAAAAAATGCCTGCTAGTGCCAGCCACCCAAATGGGATCAGGTGTCCCCAGTACCATCAGAAGGACCCTGGTGACCCCTATGGTATTCCGTGGTCTCATTCTTCACCACTGTGGGATCCCATAGAAGTCAGGGGATGTTCAGGAAAGCATCACCTCCAGATTAGAGTCAGGAGGACCTTTGTCAGTTACCGCGGTGATCTGAACCGCAAATTACCAACAGGATGTGCATTATAAAGGGGAAAAGGAAAAATAATTATTGGGAATACTGAGATTGGGGTTTCACAGCCACAGCCTCATCAACCGGCTGCCAGGTCGGGCAGATACTGACTGAATTGCTCACTGTCGCTGGGACTATTAGCAAGGTTCATTGAAACCTATATACGTGTAGCCCAGTATGCAGCATTTAGACTCCTAGGGGGCTACATACAAGTAAACTCAATGAGTTCACTAAATAAGACCACAAGACTTCTTTGTCGTTGGACTTCTGATGACGCTTGGGACAATCAAGGTGTGTCATTGTCAGGACACAGACTAGAATGAATGGGAATTCTATAAGTTGACCTACATCTCTGAAGATCCTGAAAAACTTTCCATTTTTCCTCTTGGCCTCCTCAATGTTCCTTCTCTCCCAGTAACCATTGGTAGTGAGATTGAGGTTGCATATGTTTGATGCTGTAG
Seq C2 exon
GAGGCAGTGACCTTCAAGGATGTGGCAGTGGTCTTCACTGAGGAGGAGCTGGGGCTGCTGGACCTTGCCCAGAGGAAGCTGTATCGAGATGTGATGCTGGAGAACTTCAGGAACCTGCTGTCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178386:ENST00000434772:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains