HsaINT0186655 @ hg19
Intron Retention
Gene
NA
Description
NA
Coordinates
chr12:133764458-133768589:+
Coord C1 exon
chr12:133764458-133764658
Coord A exon
chr12:133764659-133768493
Coord C2 exon
chr12:133768494-133768589
Length
3835 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
3' ss Seq
TGTGATTTTTCTATTTATAGGGT
3' ss Score
9.31
Exon sequences
Seq C1 exon
GTCCCACCTCTCCAAGAACGAAACAGTTCATGGGATAGGATCAGAAAGCTCCAAGGTCAGGAATCCATCTTGGGCCAAGGGACTCCTGGTCTGCAACCTCTCCCTGGAACACCCAGGCAGAAGCAGAAGAGTCGCAGAATAGAGAAAGTCCTAGAGTGGCTGTTTATTTCCCAAGAGCAGCCAAAAATCACCAAGTCCTGG
Seq A exon
GTGAGCTTCTCATTTGTTTATTCCTAGTGTTTTCTTTATTACCTTTTTTTTTTTTGGTGCAGAGAGGGATGGAGATCCTTAGGTCAGAGGGTTAAGTTAATCACTCCTCAGTTCAGTTCAAAACCCCCCCACTTTTTTTTTTGAGACAGGGTCTTGGTCTGTTGCCCAGAGTGGAGCGCAGTGGTGCAATCATAACTCACTGCAGCCTCAAACTCCAGGCTCAAGTGATCCTCCAGCCTCAGCCTCTTGAGTAGCTGGGACAGCAGGCAAGTGCCACCATGCCTGGCTGATGTTTTTTATTTTTAGTAGAGAGGAGGTCTCCCTGTGTGGCTCAGGCTGGTCATCAACTCCTAAGCTCAAGCAGTCCTCCTGCCTCAGCCTCCTGAGGTGCTGGGATGACAGTCATGAGCCACTGTGCCTGGCCCATGGCCCTTTTATCATCATTGGTTCATGTAAGGTCCTTATCTACCTTTATTTATATATTCTCTTATTTCCTCATACTCAATTTTCATCTCCTTTCCCATCCCCAAAAAGTTATTTTGTGTTTTATGTGTATCCTTTTTTTTAAAAAATGTGTGTTTACGTAATATGTATTGTTCGGGAAGCTTGTTAGAAATGCAGAATATCAGAGTTCACCTCAATGCTGTTAATATCAGACTCTTCATTTTAATAAGATTCAGTGATTCATGCACATTAAAGTTTAAAACAAACTTACTATGAAGCCTATATTCAAATTTTTTCCTCGGGTGCTTCTTTTACTTCCAATATTGGCTTGCTTTTTTAGTCTCTTAATGCTTACTTTTGATGAACAGATATTTCTAACTTTTACTGAGTCTGGATTGCAAATTTTTTTATTTTATTGCTAATGATTTTTGTGTCCTATTGTTTTCTTATCCTAAGCTCATAAAGATCTTTTTCTTTATTACTTTATTACTTTACCTTTCACTTTTCGATTTACAGTGCCTTTGGGATTGAGTTCAAATCCATGAACACAGGATTCCCCCATTATTTAGATCTTTGATTTTTAAAAGTCAATGTTTATAGTTTTGAGCATACAGATCCTACACAGATATTTTAGATTTATATGTAAGTTCTTTCTGTTTTGTTGTTGCTGTTGTAAACAGTATCAGTGTCTTAATTCCTTTTTTTTTTTTTTTTTTGAGATGGAGTCTTGCTCTGTCACTCAGGCTGGAGTGCAGTGGCACAATCTGGGCTCACTGCAGCCTCTGCCTCCTGGGTTCAAGCAGTTCTCCTACCTCAGCCTCCCGAGTAGCTGGGACTACAGGTGCGCACTACCATACCCGGCTAATTTTTGTATTTGTAGTAGAGACAGGGTTTCACCATGTTGGCCAGGCTGGTTTCAAACTCCTGACCTCAAGTGATTCACCTGCCTCGGCCTCCTAAAATGCTGGGAATACAGGTGTGAGCCACGGCATCCAGCTAGTTTCTTAATTTCAAAATCAAATGATTTATTGCTGTTATATAGGCATATAGCCAACTTTTATGTATTGACCATGTATCCTGTGACCTTGCTACATTCACTAGTTAGTTCTAGGAACTTTCTTAGGTTTTTTGGTATTTTCTTCATAAACAGTCGTGTCATCTTCATCTTTTCGTTGGCATCCTCAGTTTCCTTACTCTCTCTGTAAAAAAGGACAGTTTTGTTTCTTTCCAATCTGTATGCTGTTAACTACAAATTTTATTTCTTTAATAGATATGTAATAATTAAGCTTATCTGTTTGTTTGTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCTAGGCTGGAGCACAGTGGCACGACCTCGGCTCACTGTAACCTCTGCTTCCTGGGTTCAAGTGAGTCTCCTGCCTCAGCCTCCTGAGCAGCTAGGACTACAGGCATGTGCCACCATGCCCGGCTAATTTTTTTGTATTTTTAGTAGAGACGAAGTTTCACCATGTTAGCCAGGATGGTCTCGTTCTCCTGACTTTGTGATCTGCCCGCCTCGGCCTCCCAAAGTGCTAGGGTTACAGGCGTGAGCCATGGCGCCTGGCCCAAGTTTATCTGTTTTTGAGTAAGTTTGGTAATTTGCGTCTTCCAAGGAATATGTCCTTTTCAACTAACTTAACCAAATTTATGTGCGCAGAGCAGTTAGTCTTTTCTTGTCTGTGAATTCAGTAATGATAACTTCTTTTCATATCTGATGCTTGTCATGTGTGTCTTCTATTTTTGCTTTGACGTAAGTTTTCATTTGTATAAATACCTGGGGCATAGTTGCTGGATTATATGGTAAGACTGTTTAGATTTGTAAGAAGTTGCCAAACTGGCTTCCAAAGTGACTCTACCACTTTTCATTCCCACCAGCAATGAATAAGAGTTCCTATTGCTCCACATCCTCTCCAGCATTTGGTGGTCAGTTTTTTGGATTTTATCCATTCTAATAGGTGTGTAGTGGTGTCTTACTTTTGTCTGGATTTGCAATTCCCTAATGACATATGGTATTGAGCATGCTTTGTATGCTCATTTACCATCTGTATATTTTCATGTTTAGGTCTTTATCCCACAGAGTGGCTGCTACTTACAGCAGTTACCTTTTTAGTCCATAAAGTTTTAATGTGTCTTCTCTTCTGGGTACCAATAGTGCCCTTTCACAGATTTCACCTGACACTGTCAAATAGCATTGCTTCCTTCTTCCTTTGTGCCTACGTTGTAATCTGTGTTCTTTTTTCTTAGCTTCTTTGACTTTCAGTTGCATTTGCATATGTAACTGTTCTTCATTCTGCAGTGCTAAAAGCTTCTTGGTGGCAGGACTGTATTTCATTTATGTTTATATTCCTGGACATAGAGGTTGGTAACTGTATTGCAGATGTAGGAGTGATCAGTCGAACTTGTTTGCCTGACTGTCCTGCCTTTAGTACTGAAGGTCCCATATCTGAGCACTCTTGTATAGGTGGTTTCTAGGATAGCTTAAAACTGTAAAGAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCTAGCACTTTGGGAGGCCGAGATGGGCAGATCACAAAGTCAGGAGATCGAGACCATCCTGGCTAACACAGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATCAGCCGGACTTGGTGGTGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCAGGAGGTATACCTTGCAGTGAGCCAAGATCACACCACTGCACTCCATCCTGGGCAGCAGAGTGAGACTCTGTCTCAACAAAAAAAAAAAAAGAAAGAAAGATGACTGATTTAATGCACATTGATGGATGTTTTCAATACAATTTTTGTTCTCACAAAGTTAAACATAAATAATGGACACCCTAAACAGCTAGTTTTCCACAAACCTAGTAAAATAACTTGAAATTGGATGAGCATATTGTATTTCAGGGACCTTTGTCATTCATGGATGTGTTTGTGGATTTTACCTGGGAGGAGTGGCAGCTGCTAGACCCAGCACAGAAGTGCCTGTACAGGAGTGTGATGTTGGAGAACTATAGCAACCTGGTGTCCCTAGGTAAGTGCTGCCTCCCTGAGGAGGAGTGTGCTCGATCTCCAGGCTTCTTCTTGGTTGCTGAAAACTGGAGGGCTTCTATGAAATACTTAGTGATTTTGGACTTAGATTTTAAGGCCAGATTTTCTTAGTTCCCTATTGGCAGCAGAGTATGCCAGTTGAATGGTCTTTACTTTGCCAAATTGCAAAAAGGCAGCTTCATCATGCTACCTCCAAACCAAATCTTTCCCGTTCTTCAGAATCTCTGAATCTCAAGCTGTTTGTTCCAGGTTGTCTGTGATTTTTCTATTTATAG
Seq C2 exon
GGTACCAACACACCAAACCTGATATCATCTTCAAGTTGGAACAAGGAGAAGAGCTGTGTATGGTGCAGGCCCAAGTTCCAAATCAGACCTGTCCAA
VastDB Features
Vast-tools module Information
Secondary ID
-ZNF268:NM_001165885:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)