HsaINT0186655 @ hg38
Intron Retention
Gene
ENSG00000090612 | ZNF268
Description
zinc finger protein 268 [Source:HGNC Symbol;Acc:HGNC:13061]
Coordinates
chr12:133187872-133191615:+
Coord C1 exon
chr12:133187872-133188072
Coord A exon
chr12:133188073-133191488
Coord C2 exon
chr12:133191489-133191615
Length
3416 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
3' ss Seq
ATGAGCATATTGTATTTCAGGGA
3' ss Score
7.1
Exon sequences
Seq C1 exon
GTCCCACCTCTCCAAGAACGAAACAGTTCATGGGATAGGATCAGAAAGCTCCAAGGTCAGGAATCCATCTTGGGCCAAGGGACTCCTGGTCTGCAACCTCTCCCTGGAACACCCAGGCAGAAGCAGAAGAGTCGCAGAATAGAGAAAGTCCTAGAGTGGCTGTTTATTTCCCAAGAGCAGCCAAAAATCACCAAGTCCTGG
Seq A exon
GTGAGCTTCTCATTTGTTTATTCCTAGTGTTTTCTTTATTACCTTTTTTTTTTTTGGTGCAGAGAGGGATGGAGATCCTTAGGTCAGAGGGTTAAGTTAATCACTCCTCAGTTCAGTTCAAAACCCCCCCACTTTTTTTTTTGAGACAGGGTCTTGGTCTGTTGCCCAGAGTGGAGCGCAGTGGTGCAATCATAACTCACTGCAGCCTCAAACTCCAGGCTCAAGTGATCCTCCAGCCTCAGCCTCTTGAGTAGCTGGGACAGCAGGCAAGTGCCACCATGCCTGGCTGATGTTTTTTATTTTTAGTAGAGAGGAGGTCTCCCTGTGTGGCTCAGGCTGGTCATCAACTCCTAAGCTCAAGCAGTCCTCCTGCCTCAGCCTCCTGAGGTGCTGGGATGACAGTCATGAGCCACTGTGCCTGGCCCATGGCCCTTTTATCATCATTGGTTCATGTAAGGTCCTTATCTACCTTTATTTATATATTCTCTTATTTCCTCATACTCAATTTTCATCTCCTTTCCCATCCCCAAAAAGTTATTTTGTGTTTTATGTGTATCCTTTTTTTTAAAAAATGTGTGTTTACGTAATATGTATTGTTCGGGAAGCTTGTTAGAAATGCAGAATATCAGAGTTCACCTCAATGCTGTTAATATCAGACTCTTCATTTTAATAAGATTCAGTGATTCATGCACATTAAAGTTTAAAACAAACTTACTATGAAGCCTATATTCAAATTTTTTCCTCGGGTGCTTCTTTTACTTCCAATATTGGCTTGCTTTTTTAGTCTCTTAATGCTTACTTTTGATGAACAGATATTTCTAACTTTTACTGAGTCTGGATTGCAAATTTTTTTATTTTATTGCTAATGATTTTTGTGTCCTATTGTTTTCTTATCCTAAGCTCATAAAGATCTTTTTCTTTATTACTTTATTACTTTACCTTTCACTTTTCGATTTACAGTGCCTTTGGGATTGAGTTCAAATCCATGAACACAGGATTCCCCCATTATTTAGATCTTTGATTTTTAAAAGTCAATGTTTATAGTTTTGAGCATACAGATCCTACACAGATATTTTAGATTTATATGTAAGTTCTTTCTGTTTTGTTGTTGCTGTTGTAAACAGTATCAGTGTCTTAATTCCTTTTTTTTTTTTTTTTTTGAGATGGAGTCTTGCTCTGTCACTCAGGCTGGAGTGCAGTGGCACAATCTGGGCTCACTGCAGCCTCTGCCTCCTGGGTTCAAGCAGTTCTCCTACCTCAGCCTCCCGAGTAGCTGGGACTACAGGTGCGCACTACCATACCCGGCTAATTTTTGTATTTGTAGTAGAGACAGGGTTTCACCATGTTGGCCAGGCTGGTTTCAAACTCCTGACCTCAAGTGATTCACCTGCCTCGGCCTCCTAAAATGCTGGGAATACAGGTGTGAGCCACGGCATCCAGCTAGTTTCTTAATTTCAAAATCAAATGATTTATTGCTGTTATATAGGCATATAGCCAACTTTTATGTATTGACCATGTATCCTGTGACCTTGCTACATTCACTAGTTAGTTCTAGGAACTTTCTTAGGTTTTTTGGTATTTTCTTCATAAACAGTCGTGTCATCTTCATCTTTTCGTTGGCATCCTCAGTTTCCTTACTCTCTCTGTAAAAAAGGACAGTTTTGTTTCTTTCCAATCTGTATGCTGTTAACTACAAATTTTATTTCTTTAATAGATATGTAATAATTAAGCTTATCTGTTTGTTTGTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCTAGGCTGGAGCACAGTGGCACGACCTCGGCTCACTGTAACCTCTGCTTCCTGGGTTCAAGTGAGTCTCCTGCCTCAGCCTCCTGAGCAGCTAGGACTACAGGCATGTGCCACCATGCCCGGCTAATTTTTTTGTATTTTTAGTAGAGACGAAGTTTCACCATGTTAGCCAGGATGGTCTCGTTCTCCTGACTTTGTGATCTGCCCGCCTCGGCCTCCCAAAGTGCTAGGGTTACAGGCGTGAGCCATGGCGCCTGGCCCAAGTTTATCTGTTTTTGAGTAAGTTTGGTAATTTGCGTCTTCCAAGGAATATGTCCTTTTCAACTAACTTAACCAAATTTATGTGCGCAGAGCAGTTAGTCTTTTCTTGTCTGTGAATTCAGTAATGATAACTTCTTTTCATATCTGATGCTTGTCATGTGTGTCTTCTATTTTTGCTTTGACGTAAGTTTTCATTTGTATAAATACCTGGGGCATAGTTGCTGGATTATATGGTAAGACTGTTTAGATTTGTAAGAAGTTGCCAAACTGGCTTCCAAAGTGACTCTACCACTTTTCATTCCCACCAGCAATGAATAAGAGTTCCTATTGCTCCACATCCTCTCCAGCATTTGGTGGTCAGTTTTTTGGATTTTATCCATTCTAATAGGTGTGTAGTGGTGTCTTACTTTTGTCTGGATTTGCAATTCCCTAATGACATATGGTATTGAGCATGCTTTGTATGCTCATTTACCATCTGTATATTTTCATGTTTAGGTCTTTATCCCACAGAGTGGCTGCTACTTACAGCAGTTACCTTTTTAGTCCATAAAGTTTTAATGTGTCTTCTCTTCTGGGTACCAATAGTGCCCTTTCACAGATTTCACCTGACACTGTCAAATAGCATTGCTTCCTTCTTCCTTTGTGCCTACGTTGTAATCTGTGTTCTTTTTTCTTAGCTTCTTTGACTTTCAGTTGCATTTGCATATGTAACTGTTCTTCATTCTGCAGTGCTAAAAGCTTCTTGGTGGCAGGACTGTATTTCATTTATGTTTATATTCCTGGACATAGAGGTTGGTAACTGTATTGCAGATGTAGGAGTGATCAGTCGAACTTGTTTGCCTGACTGTCCTGCCTTTAGTACTGAAGGTCCCATATCTGAGCACTCTTGTATAGGTGGTTTCTAGGATAGCTTAAAACTGTAAAGAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCTAGCACTTTGGGAGGCCGAGATGGGCAGATCACAAAGTCAGGAGATCGAGACCATCCTGGCTAACACAGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATCAGCCGGACTTGGTGGTGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCAGGAGGTATACCTTGCAGTGAGCCAAGATCACACCACTGCACTCCATCCTGGGCAGCAGAGTGAGACTCTGTCTCAACAAAAAAAAAAAAAGAAAGAAAGATGACTGATTTAATGCACATTGATGGATGTTTTCAATACAATTTTTGTTCTCACAAAGTTAAACATAAATAATGGACACCCTAAACAGCTAGTTTTCCACAAACCTAGTAAAATAACTTGAAATTGGATGAGCATATTGTATTTCAG
Seq C2 exon
GGACCTTTGTCATTCATGGATGTGTTTGTGGATTTTACCTGGGAGGAGTGGCAGCTGCTAGACCCAGCACAGAAGTGCCTGTACAGGAGTGTGATGTTGGAGAACTATAGCAACCTGGTGTCCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000090612:ENST00000536435:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.254 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PU(3.3=1.5)
A:
NA
C2:
PF0135222=KRAB=WD(100=100.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains