HsaINT0186752 @ hg19
Intron Retention
Gene
ENSG00000170265 | ZNF282
Description
zinc finger protein 282 [Source:HGNC Symbol;Acc:13076]
Coordinates
chr7:148892577-148895844:+
Coord C1 exon
chr7:148892577-148892846
Coord A exon
chr7:148892847-148895424
Coord C2 exon
chr7:148895425-148895844
Length
2578 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
3' ss Seq
CTTTCTCCCTCTGCATACAGGCT
3' ss Score
9.76
Exon sequences
Seq C1 exon
CCTACGGGCTGTAGATGGAGCTGTCCGGCCCCGGAGAGGGGGAAGGCGCCTGGAAAACGTTCTTCTTCTCCCTGGCCGACCCGAGCGGGGAACAGCACTCCCAGGATGCAGTTTGTGTCAACACGGCCGCAGCCTCAGCAGCTGGGCATCCAGGGCCTGGGGCTGGACAGCGGGAGCTGGAGCTGGGCCCAGGCTCTGCCCCCGGAGGAGGTCTGCCACCAGGAGCCGGCGCTGCGCGGGGAAATGGCCGAGGGAATGCCGCCCATGCAG
Seq A exon
GTGGGAGAACCCCGCCGGCGCCATGGCCGCGCTGCCGTGGGGGCGGGGCGCGGGCTGGGCCGCGGGACCGGGCCGCGCCGTCCTCCGGTAGCCTTGCGGCGCCCTCCCAGCTTCCGCGCCCAGGCGAGGCCCGAGGCGGGCGGGGCACGGCCGGGCTGCGCGGCGGGCAGGACGGAGCGGGCCCGACGCAGGCCCGGAAGGGCAGGCCTGGCCCGCGCGGCGCGGAGCAGCGGTCGCCGGGCCCAAGTGCGGAGGCCCCGCGGGGCGGGGGCCGGGACCGTCCTTTCCGGGACCTGGCAGAGCTCTGACCCTGTGGCTGAGCCCCGGCTTGGGGCTCCCTTTGCGCCCGGCCGGCGGAGAGCTTCGCGGGCAGTGCTTCCGCCCGGCCGCAGAAGTGAATGCCTCGTTCGTGTTTACACGGTGGCCAATTTGACGGGGATATTTTTTAAATGTTTGATTACCACCTTTCACCAAGTGTAATGAGTAATTCACTCTCCCCCTGCACCGGGTGTGATCCAGGGAGGGGGCCATGGAGAGATGACTTCGGGGTCTTTCCTGCGGTTGACAAACTTGGCCGCATGTTGGAATGGCCTGGGCAGCTTTTAAGACTCCTGAGCCCTTGCCTGGTCCCAGAGCTCAGGGTCTCTGACGGGTGAGAGTAGCACCAGGCATTTCTTCAGGCTCCATCGATGATCTCCGTGGGCAGAACCGGTGCTCCAGAATTGGGTATAAAACCAGGGGAGGTGGATCCTCAGAGAGGCCTGAAAGCTTGCCCAGGGAAGACTCTCTGGGCCCACCCTGGGGCTGGGCTGCTCAGGGGCCCCTCTGCTCACCACGCGGCTCTCAGCCAGGTGCTAACGAGGGAGCCAGGGGCTGCTGTGTTGTGTTTGATCATTTTCAGGGTTAGGGCTTCAAACCCGAGAAAACTAAACTGGGCCCCGGGACTTTCTTAACTTCTACTGTGGACTCTGTCCCCTTCTGTGGGCTAGGGCGGAGTGGAGCCTCTGTGATGGAGGAATGGGTGCTTTTGATGGAAACACCAGCACCTCTTACTGGTATTACAGGGCCTGGCGATCCTAGGGCCCTGCTCTCCACTCTGCTGTGTCCCGGAGCAGGTCTGCCCCGGAGCAGGGCTGCTCTTGAGTCAGAGAGTGGGGCTGGTCTGCCCAGATCGCCCCAAGCAGCAGGCCTCCCCTTTTCCTAGCCTGAGGGCCTTTTCTGCAGCCATCGGGAGGACAGAAAATGACACCTCTTCCTGTCCCAGGTGTGAAGGAGAGTCGGCTGCCAGCCCATGTGGTCCAGTGAGCCCTGAGTCTGACACCAGGTCCCAGATGACCAGTGAACTGTCACCAGCCTCAACCAGCCCCCCTTAGCCATAGGTCTCAGCTCTCAATTGCACCAATTAGTTTACCCTTCTGGGGTGAGGGCTCTGTGCTGGAAGATAAAAGGGGGAGTCCCCAGGCCATGGGGCACCCCTTCCCCAGGAAGCAAGGAGGGGTCCCAGAGGAGTTTTTCTTTCTCTTGGTCCTCTTGGGTGTGAGGGACATCCCCTCTTCACCTCTAATGAGTGACCTTTTTTAGTGAACCTATTTTCAATTTGGAAAATGTTTATGAAACAGTAGTTGTATATGGGGGGAAGCTGCTTTTCTGCCCTAGCTTGGGCTCTCCGGTCTTTTCCTTGACTGCAGCCCTGGTAGGAATGTGGTGGGTTTTTTTGTTGTTTATTTGTTTGTTCCGAGACGGAGTCTTGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCACCATCTCGGCTCACTGCAACCTCCGCTTCCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGAGCCCACCACCACACCCGGCTAATTTTTGTGTTTTTAGTAGAGACAGGGTTTCGCCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAAGTGAGCTGCCTGCCTTGGCCTCCCAAAGTGCTGGGAAGGTGTGAGCCACTGCACCTGGCCAGGAATGTGTTTTTTGTTACCTGCAGCATCTAGAGCTGCCCCAGCTGGCAGTGCAGGGAGGCGCTGCGGAGTGACCAGCTGCCTCCCTGTGCTTCAGTTTCATCATCTTTAAGGCAGAGATCATCATTCTTGCCCTAACCTGCTGAGAGATTGCTGGGAAGATTAGCGTCAGCTAACTTACATCAAAGTTCTTGGAAACATAAAACACTAGGCAAATACAAAGTTCGTCATTAAGGCTAGCCCTTGAAGAAATCAGTTGGTCTATTCAAAGAAAGTGGCCTGTGACATTTTAGGCAGGGGTTGCAGCCTTAACTTGCTAAGGGTCAATGTGGGTGAACCAGTGACCAGCCTGACTCACCTAGGCAGGAGATGGGAGAGTGTTGAGTTGGGTGGGTGGGTGAGTGGGTAGCTGTTGCTGGGGGTGTTAGTGTATCCTGAGTTACGGGGGCCTGGCAGAAGAAAGACGACATGTAGCATCTGATTAGTTGACCCCTGTTCCCAGCTGACTTCCCCGGCTCACACAAGGTCTCATCCTGGGTTGTCGCTTTCTCCCTCTGCATACAG
Seq C2 exon
GCTCAAGAATGGGACATGGACGCCCGGCGGCCAATGCCTTTTCAGTTCCCACCCTTTCCAGATAGGGCACCTGTCTTCCCCGACCGCATGATGCGAGAGCCCCAGTTGCCCACAGCAGAGATCTCACTCTGGACTGTGGTGGCTGCCATTCAGGCTGTGGAGAGGAAGGTGGATGCCCAGGCCAGCCAGCTGCTGAACCTGGAGGGGCGCACGGGGACAGCCGAGAAGAAGCTGGCCGACTGTGAAAAGACGGCCGTGGAATTTGGGAACCACATGGAGAGCAAGTGGGCCGTGCTGGGGACCCTGCTGCAGGAGTACGGGCTGCTGCAGAGGCGGCTGGAGAACTTGGAGAACTTGCTGCGCAACAGGAACTTCTGGGTCCTGCGGCTGCCCCCGGGCAGCAAGGGGGAGGCCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170265-ZNF282:NM_003575:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.691 A=NA C2=0.231
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF124173=DUF3669=WD(100=57.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)