RnoINT0167992 @ rn6
Intron Retention
Gene
ENSRNOG00000026981 | Zfp282
Description
zinc finger protein 282 [Source:RGD Symbol;Acc:1306278]
Coordinates
chr4:77554269-77557141:+
Coord C1 exon
chr4:77554269-77554549
Coord A exon
chr4:77554550-77556721
Coord C2 exon
chr4:77556722-77557141
Length
2172 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
CTGTCTTCCCTCGCACACAGGCT
3' ss Score
9.86
Exon sequences
Seq C1 exon
TACTGTTTGCTCCTACGGGCTGTAGATGGAGCTGTCCGGCCCCGGCAAGGGGGAAGGCGCCTGGAAAACGTTCTTCTTCTCCCTGGCCGGCCCGAGCGGGGAACAGCACTCCCAGGATGCAGTTTGTGTCAACACGGCCGCAGCCTCAGCAGCTGGGCATCCAGGGTCTGGGGCTGGACAGCGGGAGCTGGAGCTGGGCCCAGGCTCTGCCCCCGGAGGAGGTCTGCCATCAGGAGCCAGCGCTGCGCGCGGAAATGGCCGAGGGAATGCCGCCCATGCAG
Seq A exon
GTGGGTGCAGCGCCCGCGGGCGCCATGGCCGCGCCGCTGCCGTGGGGGCGGGGCGGGGCCGGGCCTCAGGGAGCCTCGCGGCTGCCGGGGCCCCGGGTGAACCGCGGAGCGGGCCTGGTGCAGGCCCCGAGCGCCAGGCCATGCCGCGCTGCCACGGTGCAGCTGTCCCGGCCGGTACTGCCGAAACCCAGGGCCCGCAGGATGCGGAAGCAAGGCTGTGTTGCCCAGGACCTTGCGTGGCGGTGGCCGCTTCACTGAGCGGGGACTCGGGTTCCTCTTGGCGTCCGACTCGCCTGGGTTTGCGGCAGGCCTTTCCCCGGCCCACAGAGGGAACAGTTCAACCATGTTTACACTGTAGCCAGATTAATAAAAGGGTTTAAAGCTGTTTTATTGCTGTCTTTCTCCGACCATAAAGAGCAGCCCACTTTTCCTCTCTAGAACGGATGAGCCAGGCAAGGGTCTGGGAGGGGACTTTGTCATCTTGGGTTGGCAAACTTGCTTGCATATTGGAATCGCCAGAGCAGCCTAAGACAACTGACTACGCCCAAACCGCATCCCTGAACGTTGTCTTTGGATCCTGGGGGTGAGAGAGAAGGCTCCAGTTGTTTCTTTAGGCACTATACGTGATCTCAGGATGCCTAGGGCTTAGCTGGCACGGCCCTGGGTATAAAACACAAGGGGAAGGATCAGAGTGGTTTAACATCACTGTTTCAGAAGGGAGACTTGAGTTGCCCGGGGACTGGACTCTGAAGAAGGACACCCCCACACCCCCGTGTTCCCACCTGATTCTCAATCAGGACTTAAGACTTGACAAGTCAATATGAATTCGCTTGGGGTTGTTTTTGAGCAAAATGACCAACTGAAGGTCTTCAAACCTGCTGAAATGCAACCAGCCTCAGACTTCCTAAACTTCCATTGTCAGTCTTATCCCCTTCTTTAGACAAGGCCCCAGTGAAGCCTCCGAAAGCTCTATGGATGGCACTAATAGTCATCCAGCCACCAGGACCCAGCAGGGGCTGGCATTCCTAGGGCCCTGTTCTCACTCCCATGTCCGAGAGGAATTCTTAGACATGGTGGAGTAGTCTTCTGGCTATCACAACTTCTCAGAGTTTGAGAAAATAATTTGTATGATTGTCCAAGGCCAGTCCGGCTCACTTCAAAGGAATAGGATTCCACTTTTCCCAACCGGAGGGCCCCTTCAGCAGAAGCAGAGAGAGCATGTCTTCCTGTTCTGTTTGGGACAAAACATCAGTTATCAGCCTGTGTTGTCATCCAACACACCCTGACCACCCTCCACTTTTCTTTCTCTGTTGTAGAACTCAGCACCCAGCCTATACCTAATGGAAGATAAAGAGGGAGGCTCTGGGCCTTGGGGAGCCCCCTCATCAGGAAGCAGGGAAGGGAGCCATGAGTTTTTTCTTGTAGCCCTCCCAGGGGTGAAGAATGTCCCCTCTTCCTGTCTAATAATTGGTATTGTCTAGTAAACCTATTTTTCAGTTTGCATAGTTATGAAAAAGTAGCTGTGTGTGGAATTTAACAATTCCTGGCGTGCTGTCCCAGCATCTTCTGTCTGGTAGGCCTAGTAGAAATGGCAGTGATTGCATGTTTGCAAAGTGTTTGTGTTACCTGTGGCACTTAGAACCCTGCCAGTTGGCAGGGCAGGGCAGCGCTGAAGAATGACCAGCTGCTTCTTTGTTCCTCAATTTCATCATCTTTAAAGCAGAGATAATCATTCTTGCCCCAACCTGCAAGAGAGATTGCTCAGAAGATTAACTTCAGTCAACGTACACGGAAATTCCTACCTTGAAACAAAGAGTGAGAGCCAAACGGGAAGCTTGCCATTCAGTGTAGTCCCCAGAGAAAGCAGCTGCTCTGTTCAGAGAAAGGGTCTGTGATATGTTAGACAGGGGGCATGACCTACACTTGCTAGAGGCCAAGGCAGGTGAACTAGTAACCAGCCTGGCTCTCCTAAGGGAAGTGGAAGAGTGGTTAGTCGGATGGGTGGGTGACTGCTCTAGCTATTACTGAGATCATTAATGAGCCCAGCCAGAGGCAGAGGCTTGGTAGAAGAATGGTACTGCATAGTGCTTGGCTGGTTATCCCATTTTTAGGCCACCTTCTCTCTCACACATGTTCTTATCCTGAGCTGTCACTGTCTTCCCTCGCACACAG
Seq C2 exon
GCTCAAGAATGGGACATGGATGCCAGGAGACCAATGCCTTTTCAGTTCCCGCCCTTTCCAGATAGGGCCCCTGTCTTTCCAGACCGCATGATGCGTGAGCCCCAGTTGCCCACAGCAGAGATCTCGCTCTGGACCGTAGTGGCTGCCATTCAGGCTGTAGAGAGGAAGGTGGATGCCCAGGCTAGCCAGCTGCTGAACTTGGAGGGACGCACAGGCACAGCCGAGAAGAAGCTGGCTGACTGTGAGAAGACAGCTGTGGAGTTTGGTAACCACATGGAGAGCAAATGGGCCGTGCTGGGGACCCTGCTGCAGGAGTACGGGCTGCTCCAACGTCGGCTGGAGAACCTGGAGAACCTGCTTCGAAACAGGAACTTCTGGGTCCTGCGGCTGCCCCCTGGCAGCAAGGGGGAGGCCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026981:ENSRNOT00000037248:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.679 A=NA C2=0.279
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF124173=DUF3669=WD(100=57.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]