GgaINT1003913 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:R4GLA1]
Coordinates
chr2:539156-539699:+
Coord C1 exon
chr2:539156-539179
Coord A exon
chr2:539180-539300
Coord C2 exon
chr2:539301-539699
Length
121 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
CCGTCCGTCCCCCCCCTCAGGAC
3' ss Score
10.76
Exon sequences
Seq C1 exon
ATGGCCGAGTGGGCCCCCGCTCAG
Seq A exon
GTAAGCGTTTCCCGCCCCGCTCCGCGCCCGCGCTCCGCCGCCCTCCCCGCTTCCCACAGAGCCCTCGGGCGGGCCCGGCCCGCCTGCCCACGTCCGTGTGTCCGTCCGTCCCCCCCCTCAG
Seq C2 exon
GACCTGGAGTGGGCCATGGAGCCCCAGGAGCTGTCCCTGGAACAACCCCTGGCCGCCCCCGAGGAAGGGCCCGGCAGGGAGGCCGAGCTGCCCGCCGCCGAGATCTCGGTGACGCTGGTGACGGAGGTGCAGGCCGTGGACAGGAAGGTGGAGGCGCAGGCGGCCCAGCTGATGAACCTGGAGGGCAGGATGAGGATGGCTGAGAGCAAACTGATCGGCTGCGAGAGGACGGCCGTGGAGTTCGGCAACCAGCTGGAGAGCAAATGGACGGCCCTGGGCACCCTCATCCAGGAGTACGGGCAGCTGCAGAAGAGGCTGGAGAACATGGAGAACCTGCTGAAGAATAGGAACTTCTGGATCCTGCGCCTGCCCCCGGGGGCCAAGGGGGAAGTCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026922:ENSGALT00000044711:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.375 A=NA C2=0.233
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF124173=DUF3669=WD(100=54.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]