MmuINT0179866 @ mm9
Intron Retention
Gene
ENSMUSG00000079573 | Zfp783
Description
NA
Coordinates
chr6:47893174-47895750:+
Coord C1 exon
chr6:47893174-47893376
Coord A exon
chr6:47893377-47895427
Coord C2 exon
chr6:47895428-47895750
Length
2051 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGC
5' ss Score
8.8
3' ss Seq
CCCCTTCTTTTTCACTCCAGCCA
3' ss Score
8.31
Exon sequences
Seq C1 exon
GATTAGGGCCAGCAGGGCACGTGGCTTGGGACCGTGTGGAGAGTGCGGGCGCTGGACAGCAGCTCCGGCCCCTCACCGACGCGCAGCCCGCGCCTGGGCCGACCTGTTGACTGAAAATCAGCCGGCGCTTGGCCAGATGCGTCGATGGAGGCCCGCAGCCCAGCGACGACGTGGTAGTCATGGCTGAAGCGGCGCCTGCCCCG
Seq A exon
GTAAGCGCCCCGGTCCATGGCCGCTGTGTGCGAGGGTCTCGGCCTACCCGGCTCGGAGCACCCCCTGCCCTGGCCCCGGCCCTGGCCTGGAGGCCACGCAGGCCACGGAAGCCATCAGCCTACACATGGCCGCAGGCGGCCTGGTGGGCTGGGCCCTAAGATCGGTGCGCGCGACATGGCCTCCGTAGCCCGGCCAGGCCGGGCGCTACCTTTTCTCCGGAAGGCCTGGAAGGACCCTGCAGATCACAAAGTCCCTGTGTTCTTCTGAGACCTGCGCCCGAGCAGTCAGACAGGAGCCAGGGTCGCCTTCCTGCCACATCTGCAAGGTTGAGGCTGCGAAGGGGGCCTCAGGTCAACACCTTAGGATGAGCCTACCACTAAAATACCTAGCGACTCTACTTTCTCGTAGGAAACAATACTTAACCCAATTTGCAACAGGTTTCTAAATTTTGTGACTGGGTTGGTTTGCCAAGATATAATGGCCCTCGGATCTAGACCAGCCTGTTTACAGAGTGAGTTCCAAAAAGAAGCTGGGGGAGGGGTTAGCTTGGTAATGTTCAGTGTGCCAATTTAGAGGACATGCTAGAAGATTTTCACCAGTAAAAAAAATCTCTCAGTAAGTGGTATCTATTATTACCAATACATCTCAGACAACTCTCTGAAACCTTAGTCTCTTGGAAGCTTTTAGAAAAGAACCTCTCTTTCTCTATTTTGCTGTGTGTCCTTCTAGGTTCCCTGACTACAAGGAATAGAAAGTCAACTGGGAATTGTGGAGGTTGTGGGAGTAGGACTAGAAACCCTTCAGTTCCTTCCCACCTACTCCTGCCCCTTAGTTGTCTTGCAGTACCTAACATCCCAGAAAGCTTACCAACAGGATAGATTTCAACACTATGATAATAACTACAGCTGATACCACGGATGCTCAAGTCCCTTACATAAAATTGTGTAGTGTTTGCATATAACCTATTCATATGCTTTAAAATACATTACATCGATGTCTAGATTTCCAATACAGTGGAAGGCTAATAGTTGCATCGAGGAGGAAATGACGACAAGAAAAATGTGTACATGTTCAGAATAGACAGAGTTTTTTCTTTCCAAATTTTTTTAGGGGGACATTGGGGTAGGGTTGGGGACAGAGTTTCTGTGTAGTCCTGGCTGTCCTGGAACTCACTCTGTATGTAGACCAGGCTGGCCTTAAACTCAACAGAGATCTGCCTGCCTCTGCCTCTAGAGTGCTGTGATTAAAGACATGTGCCCTCCCCCACCACCACTGGGCTCCAGATATTTTAATCCCATGTCGGGTGTATTTTTGATTGTAGACCTGCAGGTACATGGGACAAAATGCCTTTTAAAAAAGAACAGCCAGGCATGGTGGTGCACGCCTTTAATCCCAGCACTTGGAAGGCAGAGGCAGGCGGATTTCTGAGTTCAAGGCCAGTCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACCTAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAGAACAACAACAAAACCCACAAACAGGTGTTATACTCTGCAGCCCTGGCTGGTCTGAAACAGGGCTACACAGAGAAACCCTGTCTCGAAAAACCTAAATAAATAAATAAATAAATAAATAGAACAACAACAAAACCCACAAACAGGTGTTATACTCTGCAGCCCTGGCTGGTCTGAAACTTGCCATTTAAATGATCAGGCTGGCCTCGAGCTCACAGAGATCTACCTGCCTTTAGCTCCCGAATGCTGAGATTAAAGACATGTGCCACTCTGTCTGTCTGCCTGCTCTCAGCTCTTCATTCTAAGCTAGCCTGGAACTCACTTTTTAGTTCAAACTGCCCTTGAATCTGAGGCAGTCTCCCTGCCTCAATTTGTGAATACTACCATGCCTGGTTTACGATGTGGATACTTTGATTATATGATTCTCTTGTCTCTTGAGCAGCTTTCTGAGAGGTACAGTCAGATGTGTCATAAGAGGCCACCTACCCCTTCTTTTTCACTCCAG
Seq C2 exon
CCAAATGCAGAGAAGAGCTCATACCTCTATTCCATAGAAATCACACTGTGGACCGTGGTGCCTGCTGTTCAGGCCTTGGAGAAGAAAAGTGGATTCTTGCCTGGCCCGCTTGCTGACTCTGGAGGGATGCTCAGGGACAGCAGAGAAGAAGCTGGCTGACTGTGAGAAGACAGCTGTGGAGTTCAGCAGCCAGCTGGAGGGCAAGTTGGCCGTGCTGGGGACCCTGCCTCAGGAGTCTAGGCTGCTGCATGAAGAACCTCATGGGCAACTGGAACTTCTGGGTCCAGCGGCTTCCCCCTGGCAACAAGGGGGAGGTCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079573-Zfp783:NR_027963:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: