HsaINT0188389 @ hg38
Intron Retention
Gene
ENSG00000204946 | ZNF783
Description
zinc finger family member 783 [Source:HGNC Symbol;Acc:HGNC:27222]
Coordinates
chr7:149262171-149266730:+
Coord C1 exon
chr7:149262171-149262357
Coord A exon
chr7:149262358-149266334
Coord C2 exon
chr7:149266335-149266730
Length
3977 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGC
5' ss Score
9.14
3' ss Seq
TTTTCTCTTCTTGTGAGCAGGAC
3' ss Score
7.3
Exon sequences
Seq C1 exon
AAAGGGCCAGCGGGGCACGTGGCTCGGGACGCAGTTCGCTGCCGCCCGGCAGTAGCTCTCAGGTTAGGCGGGTCCCGCTCCGCTTCCGCCGTCGCTGCCGCGCCGCCCCGGGCCCGACAGGCCGGGTCCAGGGACTGCAACCCAGCGAGGGACGCGGGCAGCCATGGCCGAAGCGGCGCCTGCCCGG
Seq A exon
GTAAGCGCCCTCGGCCCCGCGGACGCCCGGAAGGCCCAGGCCGCCGCCGCGTGAGCCCGCGCGAGGGACTCTGGCCGCGCGAGGCCGCGGGGTGAGAGGGCCTTGCGCGCAGCCTCCGCGCTCGTTGCCCCCGGCCCATCGCCCAGCCCGCGTCGAAGGCATTGACCGGGCGGCCCAAATGCCAGGCCCGGCGGGCGGGGCCCCGACGTCAGCGGCTGACGATCCGGCCCATCTGCGGCCTCAGCCAGGCCGGGCCCCAGAGTCACGCTCGGCGACGAGGAGGCCGCGCCTTAGGAGTATTGTCCCATTTGAGGCCTCGCGGCCCCCCCTACAGCAGGCTGGGCGGGCAGGGGCCGCCAGCCCCACGGGACAGTAGCGGAGGCTGAGATGGGAAGGGACAGGCCCAGGGTCACGCATCTATTAGAGGCGGGAGCCTCACGCCGGGGCAGGGATTTTGGAATTAGACACTTTAAAACGCCTCATATTCTACTTTTGCCAAAGAGAAAGATTGTGTCGTTTACAAGAGAGATAGTAGATTTTTTTAAAAAAGATTACTGTAGCAGATTTTATTTAATTTTTTTTTTTGAGAGGGAGTCTCGCTCTGTTGCGCATGCTGGATGGAGTGCAGTGGCACGATCTCGGCTCACTGCAAGCTCCGCCTCCCGGCTTCAAGGGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCGCCTGCTACCACGCCTGGCTAATTTTTCTATTTTTGGTAGAGACTGGGTTTCACTATGTTGGCCAGGCTGGTCTCGAACCCCTGACCTCGTGATCTGCCCGCCCCGGCCTCCCAAAGTGCTGGGATTACAGACGAGAGCTACCGCGCCCGGCCATTTTAAAATTTTTTAATTAAAAAAGTATATATATATACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATATATATATATATATATATTTTTTTTTTAGACACAGTCTCACTCTCACCCAGGGTGGAGTGTAGTGGCGGGATCTCATCTCACTGCAACCTCTGCCTCTGCCTCCCGGGTTCAAGGTATTCTCCTGCCTCAGCCTCCCAATCCCAAGTAGCTGGGATTACAGGCGCAGGTGCCTGTCTCATTTATATCTATCTATCTATCTGTCCAGATACATATCTATATGAATAAGTTTATTCATAAGAATACACTATAAGTATTCCTATACAGAATTTTTCTCCTGGAGAAGGAAGAATCACATCAGTTTTTTTGGCATCTTCATCTATATAAGTTAGGCCAGTTTAGCAGATTTTAGAATCTTGGTTTGATATAGTGCAGTATGTCCAATTGGGAGATTATAATCCTTTGGCCATTTTTGACATACTGGAAAACGCTTGTAAAGGCTCAATAGATGATACCTACTATTATTAATACACCTCAGTGAAGGTTTTGAAACCTTGATTTTTCTGGATACTTTTATTAAAGTATAACTTCCTCTCCCTCCTCTTAGTGAGTGTGCTGAGCTTCTTTTTGGGTTCCCTGAGTGCAAGGGAGAGAAAAAGCGTTGAGGATTCTGCAGGTTTATAGTCCTGTTCCCTGGGAAGAGGGGGCCCTAGAAGGTGACATCATCCACTCCCCCTAGCCTGGGGCTCACTGCTTCACTACCTTTCAGATCACTCCTGTCCACCTGCTCCTCCCTTCTTGCAGCACTTGAGATCCCAAAAAACTCCCCAAAAGGGACAGATTTGCCCTGGACTCTTGTTAGCCCATCCTATCACACTGTTGTTGTTTATAAGTATTCCTATACAGAATTTTTCTCCTGGAGAAGGAAGAACCACATCAGTTTTTTCTTCATCTTCACTGTACATTTACTATGATAGGTGTTCAGTAATTGTTATTGAATGAATGAAGCAATTATAGATTACTAGTGCTAAGGGGGAGGGGCAGTGAAAATCTCTAGGATGCGTTGTCTATGCTAGAATCTTAAAAACGAGAGAGACTCAGGCATACAGAGGATGCATATTGAGAGCTGATGTGAAGTTGGAGGAGGGCCGGGTGGGTCCTCGGAATCCACAGGAGGCTGGCATGGCTGGAGCACGACAGGAACTGGATGGCTCAAGGTCAAGAGAGGTCGGCTGGGCCATGAAGAAGTCTAGATCTTATGCCAGGTACACTGGGAAGCTATTGAAGAGTTTTAAGCAGGGTACTGAAATGATCTATTTGTGTTTTTAAAAGATTACCAGGCCGGGAGCAGTGGCTCACTGACTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCGGATCACAAGGTCAGGAGTTTGAGACCAGCCTGGCCAATATGGTGAAAGCCTGTCTCTACTGAAAATATAAAAATCAGCTGGGTGTGGTGGCGGGCGTCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCGCTTGAACTTGGGAGGTGGAGGTTGCAGTGAGCCGAGATTGCGCCACTGTACCCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAGATTAACAATTACTCTGTGGAAAGTGTATTGTCGGGGAGAAGCCTGGAAGTAGGGGAGAAGGCTGGAAGTGGGGGAGAAGGCTGGAAGTGGGGGAGAAGGCTGGAAGTGGGGGAGAAGGCTGGAAGTGGGGAAATCAGGTGGGCAGGACCGCAGTGGCCCAGGCCAAGCAAGGTGATGGGAACTTGGACTAGACACTGGCAGTGGAGAAGGAGAAACATGGATGGATTTGAGGTAATTTTGGAAGTTAGGACCTGATGGTGATTTAACCATGAAGGATGAATGAAATTGAGGAGTGAGATGTTGATTTGTCTCTCCAACAAGGCTTTTAGCAGCACCAACCAGGACTGTGCCCATTGCGCATGCACAATGAGGGCTTGTGAATCAGATACCAGGGTAAGCTGAGGCACTTGAGAAGCTTTTTCCAAGGCACTGAAGGACAATGGAATAAAAGAGGTGGAGGTTAAAAAAAAGGCCATATGAACTATTTATACCATATCCCTGAGCTGGAACCATCACCATAATCACTGTCATTGTCTCAGTCTGCTCAGGCTGCCTTGGTTCCCGGCAGGGCTCTTTTCCTGGTTTGCAGACGGCTGCCTTCTCATTGTATCCTCACGTGGCATACAGCAAGATCATCTCCCTTGTGTCTCCTCTTACAAGGGCGCTAATCCTATTTATGAGGGCTCTGCCTTCATGGCCTAATTGCCTCCCAGAAGCTCCACCTCCAAATACCGGCATATTGGGGATTAATGCTTCAGCAGATGGATATTGAGGGAGACACAAGCATTCATTCCATAGCAGTCAGTGTCATCTTAGCCCTGCAACATGGGGCTCATGTTTATTATCTGTGCTGTGCTACACATTGTACTAAGTGCTTTGTACACAGATTTTTCTTAATTCTCTCAGTGCTATTGTATAGGTACTATTATTATCTCCATTTTCTAGATAGGGAAGGGAAGTTGGAAGCTGTTGAAAACACCTTGCCCACAGTTGGCCAGCTTGTAAGTGGCAGAGCTGAGTTGCACCTGGGCTGTCCACTGGGGAGTCATGTTCTCTGTGCCACAAAGCCTTGTCCTTTCATTTTTAGAAGAGGAAACTGAGACCCAAGAAGGGGAGTCACTTGTTTGAGACTGCACGTGGTTGCTCAAGCCTGTGGGGCATGCCCCGTCTCCATAGCTAGCCTGTAGGACAGGAGCCGGGGCTGTTTTTCTTCCACTTTCCCACTTGCTGACACGTTGGTCCAGCCACTATCTCTTGTATCAGTTAGGCTGGATTCCTAACTGATACCCTAGCCTCTCCCTCTCCCCCCCAGTCTGCTGCTAACTCAGGAGCCCAGATGGGACTTTACCATGGCAGGTGTCATTTCCGAAGTGTGTTTTTGAGGTGGAAGTTTTGATTGTATAATTCTCATAACATCTCTCTTTTCTCTTCTTGTGAGCAG
Seq C2 exon
GACCCCGAGACAGACAAGCACACAGAGGACCAGAGTCCTTCGACACCCTTGCCCCAGCCAGCTGCTGAGAAGAACTCGTACCTCTACTCCACGGAAATCACACTGTGGACGGTGGTGGCCGCCATTCAGGCCTTGGAGAAGAAGGTGGATTCCTGCCTGACCCGCTTGCTGACTCTGGAGGGGCGCACGGGGACAGCCGAGAAGAAGCTGGCCGACTGCGAGAAGACAGCTGTGGAGTTCGGGAACCAGCTGGAGGGCAAGTGGGCCGTGCTGGGGACCTTGCTGCAGGAGTACGGGCTGCTGCAGAGGCGGCTGGAGAATGTGGAGAACTTGCTGCGCAACAGGAACTTCTGGATCTTGCGGCTGCCCCCGGGCAGCAAGGGGGAGGCCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204946:ENST00000434415:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.174
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF124173=DUF3669=WD(100=60.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains