HsaINT0188389 @ hg19
Intron Retention
Gene
ENSG00000204946 | ZNF783
Description
zinc finger family member 783 [Source:HGNC Symbol;Acc:27222]
Coordinates
chr7:148959262-148963821:+
Coord C1 exon
chr7:148959262-148959448
Coord A exon
chr7:148959449-148963425
Coord C2 exon
chr7:148963426-148963821
Length
3977 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGC
5' ss Score
9.14
3' ss Seq
TTTTCTCTTCTTGTGAGCAGGAC
3' ss Score
7.3
Exon sequences
Seq C1 exon
AAAGGGCCAGCGGGGCACGTGGCTCGGGACGCAGTTCGCTGCCGCCCGGCAGTAGCTCTCAGGTTAGGCGGGTCCCGCTCCGCTTCCGCCGTCGCTGCCGCGCCGCCCCGGGCCCGACAGGCCGGGTCCAGGGACTGCAACCCAGCGAGGGACGCGGGCAGCCATGGCCGAAGCGGCGCCTGCCCGG
Seq A exon
GTAAGCGCCCTCGGCCCCGCGGACGCCCGGAAGGCCCAGGCCGCCGCCGCGTGAGCCCGCGCGAGGGACTCTGGCCGCGCGAGGCCGCGGGGTGAGAGGGCCTTGCGCGCAGCCTCCGCGCTCGTTGCCCCCGGCCCATCGCCCAGCCCGCGTCGAAGGCATTGACCGGGCGGCCCAAATGCCAGGCCCGGCGGGCGGGGCCCCGACGTCAGCGGCTGACGATCCGGCCCATCTGCGGCCTCAGCCAGGCCGGGCCCCAGAGTCACGCTCGGCGACGAGGAGGCCGCGCCTTAGGAGTATTGTCCCATTTGAGGCCTCGCGGCCCCCCCTACAGCAGGCTGGGCGGGCAGGGGCCGCCAGCCCCACGGGACAGTAGCGGAGGCTGAGATGGGAAGGGACAGGCCCAGGGTCACGCATCTATTAGAGGCGGGAGCCTCACGCCGGGGCAGGGATTTTGGAATTAGACACTTTAAAACGCCTCATATTCTACTTTTGCCAAAGAGAAAGATTGTGTCGTTTACAAGAGAGATAGTAGATTTTTTTAAAAAAGATTACTGTAGCAGATTTTATTTAATTTTTTTTTTTGAGAGGGAGTCTCGCTCTGTTGCGCATGCTGGATGGAGTGCAGTGGCACGATCTCGGCTCACTGCAAGCTCCGCCTCCCGGCTTCAAGGGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCGCCTGCTACCACGCCTGGCTAATTTTTCTATTTTTGGTAGAGACTGGGTTTCACTATGTTGGCCAGGCTGGTCTCGAACCCCTGACCTCGTGATCTGCCCGCCCCGGCCTCCCAAAGTGCTGGGATTACAGACGAGAGCTACCGCGCCCGGCCATTTTAAAATTTTTTAATTAAAAAAGTATATATATATACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATATATATATATATATATATTTTTTTTTTAGACACAGTCTCACTCTCACCCAGGGTGGAGTGTAGTGGCGGGATCTCATCTCACTGCAACCTCTGCCTCTGCCTCCCGGGTTCAAGGTATTCTCCTGCCTCAGCCTCCCAATCCCAAGTAGCTGGGATTACAGGCGCAGGTGCCTGTCTCATTTATATCTATCTATCTATCTGTCCAGATACATATCTATATGAATAAGTTTATTCATAAGAATACACTATAAGTATTCCTATACAGAATTTTTCTCCTGGAGAAGGAAGAATCACATCAGTTTTTTTGGCATCTTCATCTATATAAGTTAGGCCAGTTTAGCAGATTTTAGAATCTTGGTTTGATATAGTGCAGTATGTCCAATTGGGAGATTATAATCCTTTGGCCATTTTTGACATACTGGAAAACGCTTGTAAAGGCTCAATAGATGATACCTACTATTATTAATACACCTCAGTGAAGGTTTTGAAACCTTGATTTTTCTGGATACTTTTATTAAAGTATAACTTCCTCTCCCTCCTCTTAGTGAGTGTGCTGAGCTTCTTTTTGGGTTCCCTGAGTGCAAGGGAGAGAAAAAGCGTTGAGGATTCTGCAGGTTTATAGTCCTGTTCCCTGGGAAGAGGGGGCCCTAGAAGGTGACATCATCCACTCCCCCTAGCCTGGGGCTCACTGCTTCACTACCTTTCAGATCACTCCTGTCCACCTGCTCCTCCCTTCTTGCAGCACTTGAGATCCCAAAAAACTCCCCAAAAGGGACAGATTTGCCCTGGACTCTTGTTAGCCCATCCTATCACACTGTTGTTGTTTATAAGTATTCCTATACAGAATTTTTCTCCTGGAGAAGGAAGAACCACATCAGTTTTTTCTTCATCTTCACTGTACATTTACTATGATAGGTGTTCAGTAATTGTTATTGAATGAATGAAGCAATTATAGATTACTAGTGCTAAGGGGGAGGGGCAGTGAAAATCTCTAGGATGCGTTGTCTATGCTAGAATCTTAAAAACGAGAGAGACTCAGGCATACAGAGGATGCATATTGAGAGCTGATGTGAAGTTGGAGGAGGGCCGGGTGGGTCCTCGGAATCCACAGGAGGCTGGCATGGCTGGAGCACGACAGGAACTGGATGGCTCAAGGTCAAGAGAGGTCGGCTGGGCCATGAAGAAGTCTAGATCTTATGCCAGGTACACTGGGAAGCTATTGAAGAGTTTTAAGCAGGGTACTGAAATGATCTATTTGTGTTTTTAAAAGATTACCAGGCCGGGAGCAGTGGCTCACTGACTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCGGATCACAAGGTCAGGAGTTTGAGACCAGCCTGGCCAATATGGTGAAAGCCTGTCTCTACTGAAAATATAAAAATCAGCTGGGTGTGGTGGCGGGCGTCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCGCTTGAACTTGGGAGGTGGAGGTTGCAGTGAGCCGAGATTGCGCCACTGTACCCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAGATTAACAATTACTCTGTGGAAAGTGTATTGTCGGGGAGAAGCCTGGAAGTAGGGGAGAAGGCTGGAAGTGGGGGAGAAGGCTGGAAGTGGGGGAGAAGGCTGGAAGTGGGGGAGAAGGCTGGAAGTGGGGAAATCAGGTGGGCAGGACCGCAGTGGCCCAGGCCAAGCAAGGTGATGGGAACTTGGACTAGACACTGGCAGTGGAGAAGGAGAAACATGGATGGATTTGAGGTAATTTTGGAAGTTAGGACCTGATGGTGATTTAACCATGAAGGATGAATGAAATTGAGGAGTGAGATGTTGATTTGTCTCTCCAACAAGGCTTTTAGCAGCACCAACCAGGACTGTGCCCATTGCGCATGCACAATGAGGGCTTGTGAATCAGATACCAGGGTAAGCTGAGGCACTTGAGAAGCTTTTTCCAAGGCACTGAAGGACAATGGAATAAAAGAGGTGGAGGTTAAAAAAAAGGCCATATGAACTATTTATACCATATCCCTGAGCTGGAACCATCACCATAATCACTGTCATTGTCTCAGTCTGCTCAGGCTGCCTTGGTTCCCGGCAGGGCTCTTTTCCTGGTTTGCAGACGGCTGCCTTCTCATTGTATCCTCACGTGGCATACAGCAAGATCATCTCCCTTGTGTCTCCTCTTACAAGGGCGCTAATCCTATTTATGAGGGCTCTGCCTTCATGGCCTAATTGCCTCCCAGAAGCTCCACCTCCAAATACCGGCATATTGGGGATTAATGCTTCAGCAGATGGATATTGAGGGAGACACAAGCATTCATTCCATAGCAGTCAGTGTCATCTTAGCCCTGCAACATGGGGCTCATGTTTATTATCTGTGCTGTGCTACACATTGTACTAAGTGCTTTGTACACAGATTTTTCTTAATTCTCTCAGTGCTATTGTATAGGTACTATTATTATCTCCATTTTCTAGATAGGGAAGGGAAGTTGGAAGCTGTTGAAAACACCTTGCCCACAGTTGGCCAGCTTGTAAGTGGCAGAGCTGAGTTGCACCTGGGCTGTCCACTGGGGAGTCATGTTCTCTGTGCCACAAAGCCTTGTCCTTTCATTTTTAGAAGAGGAAACTGAGACCCAAGAAGGGGAGTCACTTGTTTGAGACTGCACGTGGTTGCTCAAGCCTGTGGGGCATGCCCCGTCTCCATAGCTAGCCTGTAGGACAGGAGCCGGGGCTGTTTTTCTTCCACTTTCCCACTTGCTGACACGTTGGTCCAGCCACTATCTCTTGTATCAGTTAGGCTGGATTCCTAACTGATACCCTAGCCTCTCCCTCTCCCCCCCAGTCTGCTGCTAACTCAGGAGCCCAGATGGGACTTTACCATGGCAGGTGTCATTTCCGAAGTGTGTTTTTGAGGTGGAAGTTTTGATTGTATAATTCTCATAACATCTCTCTTTTCTCTTCTTGTGAGCAG
Seq C2 exon
GACCCCGAGACAGACAAGCACACAGAGGACCAGAGTCCTTCGACACCCTTGCCCCAGCCAGCTGCTGAGAAGAACTCGTACCTCTACTCCACGGAAATCACACTGTGGACGGTGGTGGCCGCCATTCAGGCCTTGGAGAAGAAGGTGGATTCCTGCCTGACCCGCTTGCTGACTCTGGAGGGGCGCACGGGGACAGCCGAGAAGAAGCTGGCCGACTGCGAGAAGACAGCTGTGGAGTTCGGGAACCAGCTGGAGGGCAAGTGGGCCGTGCTGGGGACCTTGCTGCAGGAGTACGGGCTGCTGCAGAGGCGGCTGGAGAATGTGGAGAACTTGCTGCGCAACAGGAACTTCTGGATCTTGCGGCTGCCCCCGGGCAGCAAGGGGGAGGCCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204946-ZNF783:NM_001195220:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.174
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF124173=DUF3669=WD(100=60.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)