MmuINT0178920 @ mm10
Intron Retention
Gene
ENSMUSG00000025821 | Zfp282
Description
zinc finger protein 282 [Source:MGI Symbol;Acc:MGI:2141413]
Coordinates
chr6:47877204-47880419:+
Coord C1 exon
chr6:47877204-47877836
Coord A exon
chr6:47877837-47879999
Coord C2 exon
chr6:47880000-47880419
Length
2163 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
CTTTCTTCCCTTGCATACAGGCT
3' ss Score
9.24
Exon sequences
Seq C1 exon
AAACAAACAAAAAAACCCCACCTTATGCCTAAGCAAAAGCTGACACATAGTAGGTGTTCAGAAAATATTTGGGTAAAATTTTTACAAGGGTGAGGCACCATTTTCTCCTGGGATGTCCAATGCATTCCTAGAAGTAACAGAAAGCAAGCCCCACTGTCCAGGCCGCAGCTTGGGACGTGAAGATCGACCACCCCAGCCAGACCTAGAGGCCGGCGGTCGCCGTCAGATTTCTTTGGGGGAGGCGGTGGCCCCCAGCCTGGAGTGGCCCCCGTCCAGCCCTGCAGGCGGGCAGGAGCTCCGAGGCCATTGGCTGGCGCGCCGGCTGCGAAGGGCGGGGAGCGCCACCGAAGGGGACTGTTTGCTCCTACGGGCTGTAGATGGAGCTGTCCGGCCCCGGCAAGGGGGAAGGCGCCTGGAAAACGTTCTTCTTCTCCCTGGCCGGCCCGAGCGGGGAACAGCACTCCCAGGATGCAGTTTGTGTCAACACGGCCGCAGCCTCAGCAGCTGGGCATCCAGGGTTTGGGGCTGGACAGCGGGAGCTGGAGCTGGGCCCAGGCTCTGCCCCCGGAGGAGGTCTGCCACCAGGAGCCGGCGCTACGCGCGGAAATGGCCGAGGGAATGCCGCCCATGCAG
Seq A exon
GTGGGTGCAGCGCCCGCGGGCGCCATGGCCGCGCCGCTGCCGTGGGGGCGGGGCGGGGCCGGGCCTCGGGGAGCCTCGCGGCTGCCGGGGCCCCGGGCGAACGGCGGAGCGGGCCTGGTGCAGGCCCGGAGCGCCAGGCCCTGCCGCGCTGCCACGGTGCCGCTGTCCGGGCCGGTGCGGCCGGGACCCGGGGCCCGCAGGATGCGGAAGCCGGGGCTGTGTTGCCCGGGACCTAGCGCGGTAGTGGCCGCTTCACTGAGCAGGGACTCGGGTTCCTCTTGGCGTCCGACCCGCCTGGGTTTGCGGCAGGCCTATTCCCGGCCCACAGAGGGAACAGTTTAACCATGTTTACACTGTAGCCAGTTTAATAAAAGGGTTTAAAGCTGTTTTATTGCTGTCTTTTTCCGACTATAAAGAGCAGCCCACTTTTCCTCTGTAGAACGGATGAGCCAGGGAAGGGACTGGGAGGGGACTTTGTCATCTTGGGTTGGCAAACTTGCCTGCATATTGGAATCGCCAGAGCAGCCTAAGACAACTGACTACGCCCAAACCGCATCCCCGAGCGTTGTCTTGGGGTCCTGGGGGTGAGAGAGAAGGCTCCAGTTGTTTCTTTAGGCTCCGTAGGAGATCTCAGGGTGCCTAGGACTTAGCTGGCACGGCCTTGGGTATACAGCACAAGGAGAAGGGTTAACGTGGTTTAACATCATTGTCTCAGAAGGGAGACTGAGTTACCTGAAGACTGGACTCTGAAGAAGCCACCCCTGTGTTCCCATTTGATTCTCAGTCAGGACTTAAGACTTGACAAGTCAATATGAAGACCTTTGGTTGTTTTTGAGCAAAATGACCAACTGTAGGTCTTCAAACCTGCGGAAATGCAACCAGCCTCAGACTTCCTACACTTCCATTGTCAGTCTTATCCCCTTCTCTGAACAAGGCCCCGGTGAAGCCTCCATAAGCCCAGTGGATGGCACTGACAGCCATCCAGCCACCAGGACCCAGCAGGGGCTGGCATTCCTAGGGTCCTGTTGTTCTCACTCCCATGTCAGAGAGGAATTCTCAGATGCTGTGGGGTAGTCTTCTGGCTATCACAGCTTCTCAGAGTTTGAGGAAAATAGTTCATGTGATTGTCAAAAGCCAGTCAGTCCGGCTCACTTCAAAGCAATAGGATTCCACTTTTCCCAACTGGAGGGCCCCTTCACCAGAAGCAGAGAGAACCAAGAGAGAAAGGGACATATCTTCTGGTCTGTGTTGTCATCCCGCACACCCTGACCAACCTCCACTTTTCTTTCTCTGTTGTAGAGCTCAGCACACAGCCTATATCTAGTAGAAGAGAAAGAGGCAGGCTCTGGGCCATGGGGAACCCCCTCATCAGGAAGCAGGGAAGGGAGCCACGAGGTTTTTGTTGTAGCCCTCACAGGGGTAAAGAATGTCCCTCTTCCTGTTAAAAAGTGCTATTGTCTAGTAAACCTATTTCCAGTTTGCACAGTTATGAAAAAGTAGCAGTGTGTGGAATTTTAACAGTGCCAGGTGTACCATCCAGCCTAGTATCTCTGGTAGGCCTAGTAGACATGGCAGTGATTGCATGTTTGCAAAGTGTTTGTGTTATCTGTGGCACTTAGAGCCCTGCCAGTTGGCAGGGCAGGGCGGTGCTAAAGAATGGCCAGCTGCTTCTTTGTTCCTCAATTTCATCATCTTTAAAGCAGAGATAATCATTCTTGCCCCAACCTGCAAGAGAGATTGCTCAGAAGATTAACTCCAGTCAACTTACACGGAAATTCCTACCTTGAAACAAAGAGTGAGAGCCAAATGGGAAGTCTGCCATTCAGTGTTGTCTGTGAGGCAAGCAGCTGTTCTCTTCAAAGAGAGGGTCTGGGCTATCTATGTTAGGCAGGGGGGCATGACCTAGACTTTCCAGAGGCCGAGGCAGGTGAACTAGTAACCAGCCTGGCTCTCCTAAGAAGGGAATGGAAGAGTGGTTAGTTGGATGGTGGGAGGTGGAGGGTGACTGTTCCAGCTACCACTGAGGTCATTAATGAGCCTAGCCAGAGGCAGAGGCTTGGTAGAGACACTGGGTAGTACTTGACTGCTTATCCCATTTTCAGGCCACCTTCTCTCACACACATGTTCTCATCCTGAGCTGTCACTTTCTTCCCTTGCATACAG
Seq C2 exon
GCTCAAGAATGGGACATGGATGCCAGGAGACCAATGCCTTTTCAGTTCCCGCCCTTTCCAGATAGGGCCCCTGTCTTTCCTGACCGCATGATGCGTGAGCCCCAGTTGCCCACAGCAGAGATCTCGCTCTGGACCGTGGTGGCTGCCATTCAGGCTGTAGAGAGGAAGGTGGATGCCCAAGCTAGCCAGCTGCTGAACTTGGAGGGACGCACAGGCACAGCAGAGAAGAAGCTGGCTGACTGTGAGAAGACAGCTGTGGAGTTTGGTAACCACATGGAGAGCAAGTGGGCCGTGCTGGGGACCCTGCTGCAGGAGTACGGCCTGCTGCAACGTCGCCTGGAGAACCTGGAGAACCTGCTTCGCAACAGGAACTTCTGGGTCCTGCGGCTGCCCCCTGGCAGCAAGGGGGAGGCCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025821:ENSMUST00000061890:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.691 A=NA C2=0.257
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF124173=DUF3669=WD(100=57.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types