Special

MmuINT0178920 @ mm9

Intron Retention

Gene
ENSMUSG00000025821 | Zfp282
Description
zinc finger protein 282 [Source:MGI Symbol;Acc:MGI:2141413]
Coordinates
chr6:47827554-47830418:+
Coord C1 exon
chr6:47827554-47827835
Coord A exon
chr6:47827836-47829998
Coord C2 exon
chr6:47829999-47830418
Length
2163 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
CTTTCTTCCCTTGCATACAGGCT
3' ss Score
9.24
Exon sequences
Seq C1 exon
GGACTGTTTGCTCCTACGGGCTGTAGATGGAGCTGTCCGGCCCCGGCAAGGGGGAAGGCGCCTGGAAAACGTTCTTCTTCTCCCTGGCCGGCCCGAGCGGGGAACAGCACTCCCAGGATGCAGTTTGTGTCAACACGGCCGCAGCCTCAGCAGCTGGGCATCCAGGGTTTGGGGCTGGACAGCGGGAGCTGGAGCTGGGCCCAGGCTCTGCCCCCGGAGGAGGTCTGCCACCAGGAGCCGGCGCTACGCGCGGAAATGGCCGAGGGAATGCCGCCCATGCAG
Seq A exon
GTGGGTGCAGCGCCCGCGGGCGCCATGGCCGCGCCGCTGCCGTGGGGGCGGGGCGGGGCCGGGCCTCGGGGAGCCTCGCGGCTGCCGGGGCCCCGGGCGAACGGCGGAGCGGGCCTGGTGCAGGCCCGGAGCGCCAGGCCCTGCCGCGCTGCCACGGTGCCGCTGTCCGGGCCGGTGCGGCCGGGACCCGGGGCCCGCAGGATGCGGAAGCCGGGGCTGTGTTGCCCGGGACCTAGCGCGGTAGTGGCCGCTTCACTGAGCAGGGACTCGGGTTCCTCTTGGCGTCCGACCCGCCTGGGTTTGCGGCAGGCCTATTCCCGGCCCACAGAGGGAACAGTTTAACCATGTTTACACTGTAGCCAGTTTAATAAAAGGGTTTAAAGCTGTTTTATTGCTGTCTTTTTCCGACTATAAAGAGCAGCCCACTTTTCCTCTGTAGAACGGATGAGCCAGGGAAGGGACTGGGAGGGGACTTTGTCATCTTGGGTTGGCAAACTTGCCTGCATATTGGAATCGCCAGAGCAGCCTAAGACAACTGACTACGCCCAAACCGCATCCCCGAGCGTTGTCTTGGGGTCCTGGGGGTGAGAGAGAAGGCTCCAGTTGTTTCTTTAGGCTCCGTAGGAGATCTCAGGGTGCCTAGGACTTAGCTGGCACGGCCTTGGGTATACAGCACAAGGAGAAGGGTTAACGTGGTTTAACATCATTGTCTCAGAAGGGAGACTGAGTTACCTGAAGACTGGACTCTGAAGAAGCCACCCCTGTGTTCCCATTTGATTCTCAGTCAGGACTTAAGACTTGACAAGTCAATATGAAGACCTTTGGTTGTTTTTGAGCAAAATGACCAACTGTAGGTCTTCAAACCTGCGGAAATGCAACCAGCCTCAGACTTCCTACACTTCCATTGTCAGTCTTATCCCCTTCTCTGAACAAGGCCCCGGTGAAGCCTCCATAAGCCCAGTGGATGGCACTGACAGCCATCCAGCCACCAGGACCCAGCAGGGGCTGGCATTCCTAGGGTCCTGTTGTTCTCACTCCCATGTCAGAGAGGAATTCTCAGATGCTGTGGGGTAGTCTTCTGGCTATCACAGCTTCTCAGAGTTTGAGGAAAATAGTTCATGTGATTGTCAAAAGCCAGTCAGTCCGGCTCACTTCAAAGCAATAGGATTCCACTTTTCCCAACTGGAGGGCCCCTTCACCAGAAGCAGAGAGAACCAAGAGAGAAAGGGACATATCTTCTGGTCTGTGTTGTCATCCCGCACACCCTGACCAACCTCCACTTTTCTTTCTCTGTTGTAGAGCTCAGCACACAGCCTATATCTAGTAGAAGAGAAAGAGGCAGGCTCTGGGCCATGGGGAACCCCCTCATCAGGAAGCAGGGAAGGGAGCCACGAGGTTTTTGTTGTAGCCCTCACAGGGGTAAAGAATGTCCCTCTTCCTGTTAAAAAGTGCTATTGTCTAGTAAACCTATTTCCAGTTTGCACAGTTATGAAAAAGTAGCAGTGTGTGGAATTTTAACAGTGCCAGGTGTACCATCCAGCCTAGTATCTCTGGTAGGCCTAGTAGACATGGCAGTGATTGCATGTTTGCAAAGTGTTTGTGTTATCTGTGGCACTTAGAGCCCTGCCAGTTGGCAGGGCAGGGCGGTGCTAAAGAATGGCCAGCTGCTTCTTTGTTCCTCAATTTCATCATCTTTAAAGCAGAGATAATCATTCTTGCCCCAACCTGCAAGAGAGATTGCTCAGAAGATTAACTCCAGTCAACTTACACGGAAATTCCTACCTTGAAACAAAGAGTGAGAGCCAAATGGGAAGTCTGCCATTCAGTGTTGTCTGTGAGGCAAGCAGCTGTTCTCTTCAAAGAGAGGGTCTGGGCTATCTATGTTAGGCAGGGGGGCATGACCTAGACTTTCCAGAGGCCGAGGCAGGTGAACTAGTAACCAGCCTGGCTCTCCTAAGAAGGGAATGGAAGAGTGGTTAGTTGGATGGTGGGAGGTGGAGGGTGACTGTTCCAGCTACCACTGAGGTCATTAATGAGCCTAGCCAGAGGCAGAGGCTTGGTAGAGACACTGGGTAGTACTTGACTGCTTATCCCATTTTCAGGCCACCTTCTCTCACACACATGTTCTCATCCTGAGCTGTCACTTTCTTCCCTTGCATACAG
Seq C2 exon
GCTCAAGAATGGGACATGGATGCCAGGAGACCAATGCCTTTTCAGTTCCCGCCCTTTCCAGATAGGGCCCCTGTCTTTCCTGACCGCATGATGCGTGAGCCCCAGTTGCCCACAGCAGAGATCTCGCTCTGGACCGTGGTGGCTGCCATTCAGGCTGTAGAGAGGAAGGTGGATGCCCAAGCTAGCCAGCTGCTGAACTTGGAGGGACGCACAGGCACAGCAGAGAAGAAGCTGGCTGACTGTGAGAAGACAGCTGTGGAGTTTGGTAACCACATGGAGAGCAAGTGGGCCGTGCTGGGGACCCTGCTGCAGGAGTACGGCCTGCTGCAACGTCGCCTGGAGAACCTGGAGAACCTGCTTCGCAACAGGAACTTCTGGGTCCTGCGGCTGCCCCCTGGCAGCAAGGGGGAGGCCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025821-Zfp282:NM_146175:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
ORF disruption upon sequence inclusion (1st CDS intron)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.691 A=NA C2=0.257
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NA

							
C2:
PF124173=DUF3669=WD(100=57.1)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000053643





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000110239
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr7:149195755-149198332 
LOW PSI
HsaINT0186752
(ZNF282)
Human
(hg19)
chr7:148892847-148895424 
LOW PSI
HsaINT0186752
(ZNF282)
Rat
(rn6)
chr4:77554550-77556721 
ALTERNATIVE
RnoINT0167992
(Zfp282)
Cow
(bosTau6)
chr4:113312656-113312907 
Chicken
(galGal4)
chr2:504500-505310 
LOW PSI
GgaINT0090907
(ZNF767)
Chicken
(galGal3)
chr2:414990-415800 
LOW PSI
GgaINT0090907
(ZNF767)
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"