HsaINT0186946 @ hg38
Intron Retention
Gene
ENSG00000130684 | ZNF337
Description
zinc finger protein 337 [Source:HGNC Symbol;Acc:HGNC:15809]
Coordinates
chr20:25685567-25686122:-
Coord C1 exon
chr20:25685996-25686122
Coord A exon
chr20:25685663-25685995
Coord C2 exon
chr20:25685567-25685662
Length
333 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
3' ss Seq
GTTTTTTTCCCTGTGAGCAGGAA
3' ss Score
7.3
Exon sequences
Seq C1 exon
GCTTTCTTGGCATTTGGGGATGTCACTGTGGATTTCACCCAGAAGGAATGGAGGCTGCTGAGCCCTGCTCAGAGGGCCCTGTACAGGGAGGTGACACTGGAGAACTACAGCCACCTGGTCTCACTAG
Seq A exon
GTAAGCGTGGCTTCCCTCGAGCCTAACATTTGGCCTGTGGTGCCTCTGATGTTGCCATAGGGTTAGGTTCAGAGACAAGAATGTTGTTTTCTCTATTCCCCTGAGGAAGGTCTGGCTTTGGTAAAGTTTCATACTGACTGCCACTGGGCACCTGCAGGCCTTTCCCCACACTGGGGCTCCCCCTGGGGGTTTGTACTCTGAGCATGGTAGACAGGGTCCTCCTGAGCCTTCCCCCTCTGATTCTCCCTCCCTTCCTGCCCTGGGTGGCTCCAGCAAATGGCCCGTGGAGCCTACAACCAGGAGTCACCTCATGGTTTTTTTCCCTGTGAGCAG
Seq C2 exon
GAATTCTCCATTCTAAACCAGAACTCATCAGGCGGCTAGAGCAAGGGGAAGTGCCCTGGGGAGAAGAGAGAAGACGCCGGCCAGGCCCCTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130684:ENST00000376436:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.509
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTCTTGGCATTTGGGGATG
R:
CGGCGTCTTCTCTCTTCTCCC
Band lengths:
206-539
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains