RnoINT0167765 @ rn6
Intron Retention
Gene
ENSRNOG00000027955 | Zfp133
Description
zinc finger protein 133 [Source:RGD Symbol;Acc:1566283]
Coordinates
chr3:138609099-138610668:+
Coord C1 exon
chr3:138609099-138609225
Coord A exon
chr3:138609226-138610572
Coord C2 exon
chr3:138610573-138610668
Length
1347 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
TTTTCTTTTCTGCTGAGCAGGAA
3' ss Score
6.84
Exon sequences
Seq C1 exon
GTACACATGGCATTCAGAGATGTGGCTGTGGATTTCTCCCAGGAGGAGTGGAGCCTGCTGAGCCCTGCTCAGCGGTCCCTGTACAGAGAGGTGATGTTGGAGAACTACAGCAACCTGGTCTCTCTGG
Seq A exon
GTAAGTGGTGTATCTCTCAGGACTGCTGTCTTATTAGTGCATGCACTAGTTAGTCCGTCTGTACTTGTAGCAGCCATCTTGCTTTTTGTTTCGGCCTTTGGGTTTGACAAGAGCAAAGACATTTTATTCTCTGCTTTCCTAGGGAAGTCTGATTTTGTAGAGTTGAATGTCATTAGGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTACTCTGCATCTCTAGGCTTTCCCCTCCAGTCTGGGCTCTCTCTTTTCCTAAATTAAGTAAAACAGGTATGTTTTCTTTTCATATTGTGACAAATACCCAAGAAAACAATGAAAAGGAAGTGTAGTGGTTTAAATATGCTTGACCCATGGGAAATGGCATTATTAGGTGTGGCCTTGTTGGAGGAAGTGTGTTACTGTGTTCATGGCCTTCGAGGTCTGCTGGTGCTCAAACTCCACCCAGCATGGATGAGAGCATCCTCCTGGCCGCCTTTAGATCATAATGTAGAACTCTTGGCTCCCCCAGCACCAAGTTGCCTGCCTGCTGCCATGCTTCCCTCCATGATGATGATGGGCTGAGCCTCTAAAACTGTAAGGCAGCTCCAGTTAAATGTTCTCATTTAAGAGAGTTGTCATGGTCATAGTGTCTCTTCACAGCAATAAAAACTCTAACCAAAACAAGGGAGGAATTACTTTCTCCTTTCCTCTAAGGCAGTTTCTCACTACACCCATTGGCTGCCCTAGAATTCACTGTGTAGACTAGGCTGGCCTCAAACTTGTAGAGATCCACATACGTCTGCCTCCCAAGTGTTGGATTAAAAGTGTGTGCCAGTATGGCTGGAAGGACAAATTACTTATTTTGGCTCACAGTTTCAATCTGTTGTGGTAATGGGGCTTGATAAATCACAGCAGCATACGTCACGGCAGCCAGGGAGCAGAGAGAGGGAGGGAGGACAGACTGTATGTGCTGACTCTTTCTCTCTCTTCTATCCAGGCCCAGCCTAGGGGTGATGCCACCCCCTTTTCAAGGAAGGTCTTTCTTCCTCAGTGAGTCTTCTCTGGAACCCCTCACAGTCTCAGAGGCACACTTTACTGACCTCCTAGGTGTTTCTCTACCTAATAAGCTTGGCAGTCGAAATTCACTGTGATGGATGTTCATTTACCCAGCATGGAGTAGGGTCAGTGTGTTCTCGTCTGAGTTCATCAACCTGCTAATCTCAAGTAACTGTTAACCCCTGCACTGCCATCTGAAGCTCCTCCCTCAGTCTTTGCTTTTGAGTTTACTTCAGAAACCAGGGTCAGAATCCCTTCTGTATCCTAACCTACAGTTTTCTTTTCTGCTGAGCAG
Seq C2 exon
GAATTCCATTTTCAAAACCAAAGCTCATCACCCAGCTAGAGCAAGGGAAAGAGACATGGCGAGAGGAGAGAAAATGTCCACAGGTTGCTTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027955:ENSRNOT00000031623:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.061
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACACATGGCATTCAGAGATGTGG
R:
CTGGACAAGCAACCTGTGGAC
Band lengths:
222-1569
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]