HsaINT0186197 @ hg38
Intron Retention
Gene
ENSG00000125846 | ZNF133
Description
zinc finger protein 133 [Source:HGNC Symbol;Acc:HGNC:12917]
Coordinates
chr20:18305681-18306393:+
Coord C1 exon
chr20:18305681-18305807
Coord A exon
chr20:18305808-18306297
Coord C2 exon
chr20:18306298-18306393
Length
490 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGC
5' ss Score
8.84
3' ss Seq
TTTTCTTTTCCTGTGAGCAGGAA
3' ss Score
8.24
Exon sequences
Seq C1 exon
GCACACATGGCATTCAGGGATGTGGCTGTGGATTTCACCCAGGATGAGTGGAGGCTGCTGAGCCCTGCTCAAAGGACTCTGTACAGAGAGGTGATGCTGGAGAACTACAGCAACCTGGTCTCACTGG
Seq A exon
GTAAGCCTGATATCTGTTAGGATTCCCATTCTTATTGCTGGGAATTTTAGGCTATGCTTGAAGCAGCCATCTTGCTTTGTTACTTGACCTTTGGGTTGGACCAAAAAGCAACTACATTTTATTCGTGTTTCCCCAGGGAGGGTCTGATTTTGCAGAGTGGAAAATGGGTAGATTTGTTGTGTGTGTGCATATGTGTATTGTGTGTGCTACTCTGCATTTCTAGGCCTTTTTTCTCAGGCTGGGGTTCTCATCCTATGTTAACTTGTTTTAAATGAGAGGGGTGTTCATCTACTCGGCATGGAATAGAATCAGTGTACTCTCATCTGAGTTCACTGCCCACTCATCCCTTCCATTTCTGAGAGCCCCACTCACCTCTTCCAACTCAGGGCTTTGTACTACCTTTGAAGTTTCCTAGGCTGTTTAGCTTTGAATTCTTGAATGGGCTCTTGAGCCCATAACCTAGTTACTTATTTTCTTTTCCTGTGAGCAG
Seq C2 exon
GAATTTCATTTTCTAAACCAGAACTCATCACCCAGCTGGAGCAAGGGAAAGAGACCTGGAGAGAGGAAAAAAAATGTTCACCGGCAACCTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125846:ENST00000377671:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.494
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=100.0)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACACATGGCATTCAGGGAT
R:
CTGGACAGGTTGCCGGTGAA
Band lengths:
223-713
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains