HsaEX0073029 @ hg38
Exon Skipping
Gene
ENSG00000125846 | ZNF133
Description
zinc finger protein 133 [Source:HGNC Symbol;Acc:HGNC:12917]
Coordinates
chr20:18305008-18306393:+
Coord C1 exon
chr20:18305008-18305178
Coord A exon
chr20:18305681-18305807
Coord C2 exon
chr20:18306298-18306393
Length
127 bp
Sequences
Splice sites
3' ss Seq
GGCTCAGTTTTGTGTTACAGGCA
3' ss Score
6.78
5' ss Seq
TGGGTAAGC
5' ss Score
8.84
Exon sequences
Seq C1 exon
TGTGTCCTCCATTTGGAAGTAGTGCTAAGAAAATTAAAAGAATAAAACTGGGCAGGGGCATGAGAATAGGATGCAAAGATGAATTTTTGGACTGAGTGGCCAAGAAGCTCCATGGTGAGCACTCACAGTCTAAGGCTGGAAGTTTAATGAACTGTTTTCTACATTTCACAG
Seq A exon
GCACACATGGCATTCAGGGATGTGGCTGTGGATTTCACCCAGGATGAGTGGAGGCTGCTGAGCCCTGCTCAAAGGACTCTGTACAGAGAGGTGATGCTGGAGAACTACAGCAACCTGGTCTCACTGG
Seq C2 exon
GAATTTCATTTTCTAAACCAGAACTCATCACCCAGCTGGAGCAAGGGAAAGAGACCTGGAGAGAGGAAAAAAAATGTTCACCGGCAACCTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125846-'4-18,'4-14,6-18
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.494
Domain overlap (PFAM):
C1:
NA
A:
PF0135222=KRAB=WD(100=100.0)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCATTTGGAAGTAGTGCT
R:
ACAGGTTGCCGGTGAACATTT
Band lengths:
258-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development