HsaALTA0009734-2/4 @ hg38
Alternative 3'ss
Gene
ENSG00000125846 | ZNF133
Description
zinc finger protein 133 [Source:HGNC Symbol;Acc:HGNC:12917]
Coordinates
chr20:18288283-18305807:+
Coord C1 exon
chr20:18288283-18288604
Coord A exon
chr20:18305681-18305722
Coord C2 exon
chr20:18305723-18305807
Length
42 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
GGCTCAGTTTTGTGTTACAGGCA
3' ss Score
6.78
Exon sequences
Seq C1 exon
GCTCAGAAGGAGGGTCACAGTAGGGCCAGGCACTCTTCTCGGGAGCTCCTACGTGTTTTATGCACGTGGTTAAGAAAAAAGAGGGAGAATTCAGGTGCCACAGTGGCCATTCTCCGGTGACCGGAGCGTGTTACTCAGAAACGGATCCGTCAGAGGCCAATGGGAGCTGCCGGCCTTCAGGGCGCGCCTGGTGGCGCCGAGCATCCTGGGAGGTGTGGTCCGGGCGCTGTGCCGAGGATTCGGGGTAGTGTAGTCCTGGCGCCCCGCTGGAGGAGCTCCCCAGCTGGTGGCTGGAGCGACCCCTTGTTCTTTGGTGGCGCTG
Seq A exon
GCACACATGGCATTCAGGGATGTGGCTGTGGATTTCACCCAG
Seq C2 exon
GATGAGTGGAGGCTGCTGAGCCCTGCTCAAAGGACTCTGTACAGAGAGGTGATGCTGGAGAACTACAGCAACCTGGTCTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125846-0-15,0-14,0-13,0-12-2/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.486 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=100.0)
Other Inclusion Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCGGGGTAGTGTAGTCCTGG
R:
TCTCCAGCATCACCTCTCTGT
Band lengths:
145-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains