HsaEX0073026 @ hg38
Exon Skipping
Gene
ENSG00000125846 | ZNF133
Description
zinc finger protein 133 [Source:HGNC Symbol;Acc:HGNC:12917]
Coordinates
chr20:18288477-18305807:+
Coord C1 exon
chr20:18288477-18288604
Coord A exon
chr20:18297985-18298062
Coord C2 exon
chr20:18305681-18305807
Length
78 bp
Sequences
Splice sites
3' ss Seq
TTTCTGTTTTCCTTACCCAGATC
3' ss Score
9.96
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
CGCCGAGCATCCTGGGAGGTGTGGTCCGGGCGCTGTGCCGAGGATTCGGGGTAGTGTAGTCCTGGCGCCCCGCTGGAGGAGCTCCCCAGCTGGTGGCTGGAGCGACCCCTTGTTCTTTGGTGGCGCTG
Seq A exon
ATCTACCTTCTGAGATATCATCCTTCTTCAGGGAGATAAGGAAAAAAAGCCACAGGGTCCCGGAGAGCCAGGGGAATG
Seq C2 exon
GCACACATGGCATTCAGGGATGTGGCTGTGGATTTCACCCAGGATGAGTGGAGGCTGCTGAGCCCTGCTCAAAGGACTCTGTACAGAGAGGTGATGCTGGAGAACTACAGCAACCTGGTCTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125846_MULTIEX1-2/8=C1-5
Average complexity
C2
Mappability confidence:
92%=100=92%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.486 A=0.379 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=100.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCGGGGTAGTGTAGTCCTGG
R:
GTACAGAGTCCTTTGAGCAGGG
Band lengths:
168-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development