HsaINT1047294 @ hg38
Intron Retention
Gene
ENSG00000125846 | ZNF133
Description
zinc finger protein 133 [Source:HGNC Symbol;Acc:HGNC:12917]
Coordinates
chr20:18305008-18305807:+
Coord C1 exon
chr20:18305008-18305178
Coord A exon
chr20:18305179-18305680
Coord C2 exon
chr20:18305681-18305807
Length
502 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
GGCTCAGTTTTGTGTTACAGGCA
3' ss Score
6.78
Exon sequences
Seq C1 exon
TGTGTCCTCCATTTGGAAGTAGTGCTAAGAAAATTAAAAGAATAAAACTGGGCAGGGGCATGAGAATAGGATGCAAAGATGAATTTTTGGACTGAGTGGCCAAGAAGCTCCATGGTGAGCACTCACAGTCTAAGGCTGGAAGTTTAATGAACTGTTTTCTACATTTCACAG
Seq A exon
GTAAGAAAACTGGGATACTAGTTGGTGGCAGAGGTGGGTCTGAAACTCAGGCACCATGATTCCAGGGCTTCACTACTCTCTGCTTGTGACCATCAGGCCCGAGAAAGCCAAGCCGTAGGATTTTGAGGAATTACTGAGTTATAGTGGACTATTTGATCTTTTAAATTCTTAAAACTCGGAAAATCTGTTATCCTTTATTGTTGCTTACATTTTATATGTTGCTTGCTCTTCTGTCTGCCTAGATTTAAAGTTCCCAAAATGTAGGGACTCCATTTTGTGCACATATACCCTGTGTGGCCCCCCAGGATCTTGACTGTATGGGTTCACAAATGCCACTGGCTGGATTGAGACAGGGATTTAAAAGTCTTGGAACACATGGCACCAGGGTCACTGGGATCTTGATATCTCACCTGCCTCCCCCAGGGCAGCCTTATCCCTGCCCCTCACCCTGCCATGGGCAAGGCTGGCTTCTGAGTGAGCAGGGCTCAGTTTTGTGTTACAG
Seq C2 exon
GCACACATGGCATTCAGGGATGTGGCTGTGGATTTCACCCAGGATGAGTGGAGGCTGCTGAGCCCTGCTCAAAGGACTCTGTACAGAGAGGTGATGCTGGAGAACTACAGCAACCTGGTCTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125846:ENST00000377671:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0135222=KRAB=WD(100=100.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCTCCATTTGGAAGTAGTGC
R:
AGTGAGACCAGGTTGCTGTAGT
Band lengths:
294-796
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains