BtaEX0041099 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004620 | ZNF133
Description
Bos taurus zinc finger protein 133 (ZNF133), mRNA. [Source:RefSeq mRNA;Acc:NM_001110090]
Coordinates
chr13:38709229-38717773:+
Coord C1 exon
chr13:38709229-38709404
Coord A exon
chr13:38717152-38717278
Coord C2 exon
chr13:38717678-38717773
Length
127 bp
Sequences
Splice sites
3' ss Seq
AGGGCTGTTTTGTGTTACAGGCA
3' ss Score
8.25
5' ss Seq
TGGGTAAGC
5' ss Score
8.84
Exon sequences
Seq C1 exon
GTCCATTCCTGATGCCTTTAACGAAGAGGGAAGTCTAAGGGCGTGAGTTTCCAGTGACTCTCCTGAACCTTTCTGCTCTTGTGCTGCCCAGAGAGGAAGCCTGGTGGGCGAGGGGAGGGCTCCTGACAGCCCGGACTCACGTGGGGACTGCTCGCCTTCCGTGTGCTGAACCAAAG
Seq A exon
GCACACATGGCATTCAGAGATGTGGCTGTGGATTTCACCCAGGATGAGTGGGTGCTGCTGAGCCCAGCTCAGAGGTCCCTGTACCGGGAGGTGATGCTGGAGAACTACAGCAACCTGGTCTCACTGG
Seq C2 exon
GCATTCCGTTTTCTAAACCAGAACTCATCACCCAGCTGGAGCAAGGGAAGGAGACCTGGAGAGAAGAGAGGAAATGCTCGCCCGTCAGCTGCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004620-'4-8,'4-7,7-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.030
Domain overlap (PFAM):
C1:
NA
A:
PF0135222=KRAB=WD(100=100.0)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGATGCCTTTAACGAAGAGGG
R:
GGGCGAGCATTTCCTCTCTTC
Band lengths:
252-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development