RnoEX0101040 @ rn6
Exon Skipping
Gene
ENSRNOG00000027955 | Zfp133
Description
zinc finger protein 133 [Source:RGD Symbol;Acc:1566283]
Coordinates
chr3:138597833-138610668:+
Coord C1 exon
chr3:138597833-138597933
Coord A exon
chr3:138609099-138609225
Coord C2 exon
chr3:138610573-138610668
Length
127 bp
Sequences
Splice sites
3' ss Seq
AGGGCTGTTTTGTGTTCCAGGTA
3' ss Score
9.59
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
CCTGCGCCTGGAAGCCTCTGAGTAATGTAGTCCTGGCGCCGGCTGGGCATGGGGTGGGGTGTGCTCCCCAGCTGGAGGCTGGAGCAGCCCCTTGTTCTTTG
Seq A exon
GTACACATGGCATTCAGAGATGTGGCTGTGGATTTCTCCCAGGAGGAGTGGAGCCTGCTGAGCCCTGCTCAGCGGTCCCTGTACAGAGAGGTGATGTTGGAGAACTACAGCAACCTGGTCTCTCTGG
Seq C2 exon
GAATTCCATTTTCAAAACCAAAGCTCATCACCCAGCTAGAGCAAGGGAAAGAGACATGGCGAGAGGAGAGAAAATGTCCACAGGTTGCTTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027955-'1-6,'1-4,5-6
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.061
Domain overlap (PFAM):
C1:
NA
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCGCCTGGAAGCCTCT
R:
GGACAAGCAACCTGTGGACAT
Band lengths:
194-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]