Special

HsaINT0187358 @ hg19

Intron Retention

Gene
ENSG00000196263 | ZNF471
Description
zinc finger protein 471 [Source:HGNC Symbol;Acc:23226]
Coordinates
chr19:57029851-57040269:+
Coord C1 exon
chr19:57029851-57029946
Coord A exon
chr19:57029947-57035692
Coord C2 exon
chr19:57035693-57040269
Length
5746 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TTTTTTTTAATATCTTTCAGATT
3' ss Score
11.75
Exon sequences
Seq C1 exon
GTCTTTGCATTTCTAAGCCATATGTGATCTCCTTATTGGAGCAAGGGAGAGAGCCTTGGGAGATGACGAGTGAGATGACAAGAAGCCCATTCTCAG
Seq A exon
GTGAGTGTGGAAGAACCAGAGAGGGGAATCTTTTTGACATAATGGCTCAGCCATTTTTAGAGGTGATACCTTCTCACTTATGCATCTCAGAAACTCTTCATAAGCCTTACAGGCCTGGAGAGAAAACTGAAACTTTATGCTTCACATGGGCCCCTCAAATATCTTCTCTTCCACTTGACTGTCTTCTCTCTAAGAACTAATATTCTGTAGAGATTAGAGAATCTTAAATCTCTAAGATTTTTGTTTTGCAAAAATCATTATCCAGCTCCTTACCATCCCGTCTTTCGCTTTGCCATACAGACTTATATAAACTTCTATGTTTCTTAAATCTTTTCTTAACTCTTGAATTAGGTACTGCTTACAAATTATAATGTACCCTGCTGCTCTTTCATTCCTTTCCTGTAGCAGATAGGAAAAATCTAAACCCTGTTAGCCTCTTCCTGATCAGCTCCTTCCTACTTCTATAACCTCATTCTTTATTACTTTTTAGCTTTTTCATTATACTTTAGTCCAGAGTTTGCTAAATTATGTGAGATACCCAGGGTATGTTTCAAGTGAGTTACAGGTATACCAAGCTACTGAGTCTCTCAAGAGCCTTGGGAGACTAGATGGCTCCAGAGGTAATTCCAAATCTGATTGCCTCTGAGTCACAGGCAGTATCATTCTTTTGCCTGCTCCACCTGTGTTTTACAAATGTCATATTAGGGTCAACTTTTCTGAACTCACCAAGCTTTTTACTGACTCAGGCATATGCACTTCCTGTTTCCTCTACCCAGAGTGTTCCTCTCCTGGGGTCTGTCTATCCTGAATATCAAATCAGAGCTAAAAAATCATCTCATCAGAGGCCTTCCCTAACCACCTTATGTGATGAACATTTCCCCATCCCAACCCAATAACTGTCCACCAAGCCACTGTTTATTTTCTTTCTAACACTCAGGAAAGCCTACAATTAACTTGCTTATGTTTAATGCTTATATTCTGCCTCTCCCACTGAAATTAAAGTTCCAAAAGAAAAGGGCATATCAATATATGCCCTTACAATTATGGCTTAAAGCATTCTCCTTTCCCTTCTGTAACAGTGTTTGATCTTTTGGAATAATTTGGATCCTAAATTTCCCGTGTCCTCCAAATACAATAGTCCCCCTATTCAAGGTTTTGCCTTCTGCAGTTTGTTACCCACAGTCCACCACTGTCCAAAAATATTAAATGGAAAATTCCAGAAGTAAACAATTTATATGTTTTAAATTGTGCACCATTCTGAGTTGTATGACGAAGTCTTGCACCTTTCTGTTCTGTCCTGCCCAGATCATGAATCATCCCTTTGTCTAGCACATCCATGCTGTATGCCCTACCTGCCTTTTAGTCTCTTAGTCTCGTCTAGCTTTTCAGATCTGTTGTGTGTAGTGAATATAGGGTTCAGTATCATTCCGGGTTTCTGGCGTCCACTGGGTCTTGAAATGTGTCCACTGTGGATAAGGAGGGATGACTATACCCACACATCAGAAGGGAAATAGACCCTGCTTGGATGTACTTTATACTTTGGTTTTGTATGAAGATGCCATCTGCCTCAAATAGAGAAACAGAAAAGAACTTTCCTGATAATTGGCCCTGTGAAGAACAAGTGGAAGAAGGGAAAAGGGGAAAAGGAAGAAGCTATAAGTCTGGTGGGATGCTGAGTCAATGTGTAGATATAAGTATTATTGTATGCATAAGATATCTTAGTGTCTGTTAAAAAAGGCCAGGAAATGAGGAACAACCATGGCTCTCTGTAGGAAATTGGAGTTGAAGACAATCTTCATGTGACAAAAAAGTAAAATGTGAGAAAACAGTAGATGATGGACTCAGCATTCTGTGTCTTTTTCTAGTATTGTTCTCTTCAGTCTGTCTACGTAGGAAAAATTATAGGTGATTAGTTCATTAACCCCACATTGCCTCAATTCTTGAAGCATGGGTGCCCTGGTCTGAATGTTTGTGTGCCCCTGAAATTCATGTTGAAATCATCTTCTCTAGAGTGCTGGTGGTAGGTGGGGACCTTGGGAGGTGATTAGGTCATGAGGGCTCATGAGTGGGATTATTACCTTTATAAAAGGCCCAAAGGAGCTTCCTTGCCCCTTCCACTGTGTGAGGAAACAGGAAGAAGGCACCATCTGTGAGAAAGCCAGCCCATGCCATGGGCCTTGATCTTGGATTTCCCAGTCTGCAGATCTGTGAGAAATAAATTAGCCATGGCCGGCTAATTTTTTATAAGTGTATTAGTCTGTTTAGTTATAAGTGTTGTTTGTAAGTGTATTAGTCTGTTCTCAAGCTGCTAATAAAGACATACCTGAGACTGGGTAGTTTATAAAGGAAAGAGGTTTAATTGACTTTTAGTGCCACATGGCTGGGGAGCCCTGACAGTCATGGCAGAAAGCAAAGGAGGAGCAAAGTCACTTCTTACATGGTGGCAGTCAGGAGAGAGCTTGTGCAGGGGGACTCCCATTTACAAAACCATCAGATCTCGTGAGACTTATTCACTGCCAGTGAACAGTATGGGGGAAACTGCCCCCATGATTGAATTATCTCCACCTGGCCCCACCCTTGACATGTGGGTATTACTACAATTCAAGATGAGATTTGTGTGGGGACACAGCCAAACCACATCAATAAGCTACCCACTATGTGGTACAGTCATGGGCCACATAAACAATGTATCTATCCATTATGGACTGCATATAAGACAGTCACACAAGATTATGATGGAACTGCCCTATACAGGTATAACTTTAAAAAAATCTCTTCTGGCTAGGCGTGGTGGCTCATGCCCATAATCCCAGCACTTTGGGAGGCCGAGGCAGGCAGATCACGAGGTCAGGAGATTGAGACCATCCTGGCTAACATGGTGAAACCCCGTCTCTGTTAAAAATACAAAAAAATTAGCTGGGCATGGTGGCATGTGCCTGTAGTCCCAGCTACTCGAGAGGCTGAGGCAGGAGAATGGCATGAACCCGGGAGGCAGAACTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCCGGGCAACAGAGCAAGACTCTGTCTCAAAAAAAAAAAAAAAAAAAAACTCTTCTATTGCTGGGCATGGTAGCTCACACCTATAATCGCAGCACTTTGAGAGGCTGAGGTGGGAGGATTGGTTCAGCAGGAGTTCCAGACCAGCCTGGGCAACAGCAAGACCTCATCCCTACTAAAAATAAAAAATTAGCTGGGCATGGTGGCATGCACTTGGTACTCCCAGCTACTCAGGAAGCTAAGGCAGAAGGATCACTTGAGCCCAGGAGTTTGAGGATGCAGTGAGCCATGATCATGCCATTGTACTCCAGCCTGATGACAGAGGGGACCCTGTCTCAAAAAATATATATAAAATGTCCTCATAGCATATTTTACTGTACCTTCTTTATGTTTGTATATGTTTAGATACAAAAATACCATTGTGCTTCAGTTGCCTATAGTATTCAGTGGTAACATGTTGTGCAGGCTTGTAGACCAGGAGCAGTAGGCCATATAGCCTAAGTGTGCAGCAGGCTACACCATCCATCAAGGTTTGTATAAGTACGCTCTGTAATTGCCCATCCGTAATGATGCATTTCTCAGAGCATTTCTCCATCATTAAGTGACACAAGACTATTTTGTTATAGCAACCCAAGTTATTCAAGACACTGGATATTCCTGATACCATGAAGACCTGGACTACAAAGCATGTTAATACCTCAAAACCTTTCTTGACTGCTCTAGTGGATTTGATCTCTCCCATCTCTGAACTTTTATAACAATTTAATCTTTATCTCACACTTGATTATGTTTTGTATTATCTTCTCAAAACTTTTTTTGTTGGTCTTGTCTTCCTAAATTACTTTCTAAACTTTTCAAGAACAATTCCTTCATTACTTTGATATCACAAATGCTTAGTGCATAATGTATAATTGCTTAGGAAATATTGGATTAGTCGATGATTTGCTATGGATGACATAGAAAAGGAAAGCCCTTCCTTTGCCTTTTCTTGAAACCACCTTTTCCCTCAGGTTTTCTCTCAGTATCATCTCTTCAATACAAATTTCTTTATATTTTACTGATAACTTTGTATATATGCCCAGATTTCTTCTATCTATGGTAAGTGATGTAGCAATATATTTTTTCTTTTTTTCTTTTTTTTTTTTTGAGATGGAGTTTCATTCTTGTCACCCAGGCTGGAGTGCAATGGCACAGTCTTGGCTCACTGCAACCTATGCCTCCTGGGTTCAAGCAATTTTCCTGCTTTAGCCTCCCAGGTAGCTGGGATTACAGGCAGGTGACACCATGCCCCGCTAATTTTGTGTTTTTAGTAGAGACAGGGTTACACCACATTGGCCAGGCTGGTCTCTAACTTCTGACCTCAGGTGACATGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCATTGCACCTGGCCGATGTTGCAATAATTTTTAAAGCACATTTATTCCTTCTGTAAACTTATATTCTAGGTCAGGAGTTAAGAAAGTTACTCGTGGTAGTAAATAAGAATGTGATTAATAGTAGTTATATCAACCTACATATCATTATAAAATTCATTTCTTCAAAAGGGGAAATGGTAAAACCCTGTTAAGCAGTGGCTTAAGGTGCTGGGTGCAGTGGCTCACACCTGTAATCCTAGCTACTCAAGAGAAGGTGGGAAGATTGCTTAAGCCCAGGAGTTAGTGAGCCATGATCATGCCACTGCACTCCAGCCCGGACAACTGAGTGAAACCCTCTTTTTTTTTTTTTTTTATAAAAAGGTGGTCTAAGAGGTGATAATTTTACCAGGCTGTTGAAAGTAAGATGAAAGGGAAAATCTCTTAATATGCAGATTAAAGTTCAGGGAACTCTGAGAATTGGAGAGTTTGCTGTATTGAAACATGTAGATGATTTCATAGGAACACCATTTTCACATTATGAAAAGATAACCATAGGATTTCACCTAAATCCTAAGATAATCACAAGCCATAGGGTATATGGTTACTGGAGATCTCCAGAGACTTTTCAGCAGCAGTAGTGATACGATATTGGTATTTAAACAAAGTTAACATAACTGTATATGAAAACCAATTACAAGTGGAAGAGAGTAGATGAAGAGAGCTTAATTTATAGTCTGTTAGGTCAATACAGGCATGAAATATTACCATTGCAGACTACTTCTCTAGGATTTCATCCTACATTGAGGTTTTTGTTTTTGTTTTTTGTTTTTGTTTTTGTTTTGAGACAGGGTCTTGCTCTGTTGCCTAAGCTGGAGTGCAGTAGGGCAATCATGGCTCACTGCAGTCTCAACCTCCTGGGCTCAAGTGATCCTCTGACCTCAGCCTCCTGAGTAACTGGGAATATAGGCATGTACCACCATGCTTGACTAATTTTTGTGTTTTTTGCAGAGATGGTGTTTTGCCATGTTGCCCAGGCTGGTCTTGAACTCCTGGGCTCAAGCAATCCACCTCAGCCTCCTAAAGTGCTGGGATTATAGGCCTAAACCACTACACCTAGCCCATTTCGCTTTCTTAGTCACCTCTCCCATGTTCCTTCATGAGCTGTCTTTCTTGGGGTCTCCCTGAATGTTTTCCAGTTGACATGCCTGTACATAACAGGTTTTGTGAGATTTATTAAATATTTTTAAATTACCTTTTTCACAATGTCTCCTTTGTTGTAGCCCATGATAAAGGGAACATTCACTTTTTTTTAATATCTTTCAG
Seq C2 exon
ATTGGGAATCTATATATGTGACACAGGAATTACCTCTGAAGCAGTTCATGTATGATGATGCATGCATGGAGGGAATTACTAGCTATGGACTTGAGTGTTCCACTTTTGAAGAAAATTGGAAATGGGAAGACCTTTTTGAGAAGCAGATGGGAAGTCATGAGATGTTTAGCAAGAAAGAAATAATCACTCATAAAGAAACCATCACTAAGGAAACAGAATTCAAATATACTAAATTTGGGAAATGTATCCATCTGGAAAACATAGAAGAGAGTATTTATAATCACACATCAGATAAAAAAAGCTTCTCCAAAAATTCTATGGTAATAAAACACAAGAAAGTCTATGTAGGAAAGAAGCTTTTTAAATGTAATGAATGTGACAAAACCTTCACCCATAGCTCATCCCTTACTGTTCATTTTAGAATTCATACTGGTGAAAAACCATATGCATGTGAGGAATGTGGAAAAGCCTTCAAGCAAAGGCAACACCTTGCTCAACATCACAGAACACATACTGGAGAGAAACTCTTTGAATGTAAAGAATGTAGGAAAGCCTTCAAACAAAGTGAACACCTTATTCAGCATCAAAGAATTCATACTGGAGAAAAACCATATAAATGTAAGGAATGCAGAAAAGCCTTCAGACAGCCTGCACACCTTGCTCAGCATCAGAGAATTCATACTGGAGAGAAACCCTATGAATGTAAAGAATGTGGCAAAGCCTTCAGTGATGGCTCGTCTTTTGCTCGACATCAGAGATGTCACACTGGCAAAAGACCCTATGAATGTATTGAGTGTGGGAAGGCTTTTAGGTATAACACATCTTTTATTCGTCACTGGAGGAGTTATCATACTGGAGAGAAGCCTTTTAATTGCATTGATTGTGGGAAAGCCTTCAGTGTTCACATAGGACTTATTCTGCATAGGAGAATTCATACAGGAGAGAAACCTTACAAATGTGGTGTGTGTGGAAAAACCTTCAGCTCGGGTTCATCCCGTACTGTACATCAGAGAATTCATACAGGAGAGAAACCTTATGAATGTGATATATGTGGGAAAGATTTTAGCCATCATGCATCACTCACTCAGCATCAAAGAGTACATTCTGGAGAGAAACCGTATGAATGCAAGGAATGTGGGAAAGCCTTTAGGCAGAATGTACACCTTGTTAGTCATTTGAGAATTCATACTGGTGAAAAACCCTATGAATGTAAAGAATGTGGAAAAGCTTTTAGAATCAGTTCACAGCTGGCTACTCATCAGAGAATTCATACTGGAGAGAAGCCTTATGAATGTATTGAATGTGGAAATGCTTTCAAACAGAGATCACACCTTGCCCAACATCAGAAAACTCATACAGGAGAGAAACCTTATGAGTGTAATGAATGCGGGAAAGCCTTCAGCCAAACTTCCAATCTTACTCAACATCAAAGAATTCATACTGGAGAGAAACCCTATAAATGTACTGAATGTGGAAAGGCTTTTAGTGATAGCTCATCCTGTGCTCAGCATCAAAGACTCCACACTGGCCAAAGGCCCTATCAGTGTTTTGAATGTGGGAAGGCGTTCAGAAGAAAGTTATCCTTAATTTGTCATCAAAGAAGTCATACTGGAGAAGAACCTTAAGAATGTAGTGCATGTGGCCAAGCCTTTAGTTATCACCAATCCCCTACTGTTAATCAGAGATGTCCCACTGGATAAAAAACATATAAATGTAAGAAATGTAGAAAAACCTTCAGCCAGGAGGCTGGCAAGATGGCCGAATAGGAACAGCTCTGATCTGCAGTTCCCAGTGAGATCAACGCAGAAGGTGGGTGCTTTCTGTATTTCCAGCTGAGGTACCTGGCTCATCTCATTGGGACTGGTTAGACAGTGGGTGCAGCCCACGGAGGGTGAGCTGAAGCAGGGTGGGGCGTAACCTCACCTGGGAAGTGCAAGGAGTCGGGGATCTCCCTCCCCTAGCCAAGGGAAGCCATGAGGGACTGTGCCATGAGGAATGGTGCACTCCGGCACAGATACTACGCTTTTCCCATGGTCTTCGCAACCCACAGACCAGGAGATCCCCCTTGGGTGCCTATGCCACCAAGGCCCTGGGTTTCAAGCACAAAACTGGGCGGCCATTCGGGCAGACACCGAGCTAGCTGTAGGAGTTTTTTTGATAGCCCAGTGGCACCTGGAATGCCAGTGAAACAGAACCGCTTACTCCCTTGTTAAGGGGGCTGAAGCCGGGGAGCCAAGTGGTTCCCATGCCCACTGAGCCCAGCAAGCTAAGATCCACTGGCTTGGAATTCTCCCTGCCAGCACAGCAGTCTGAAGTCAACCTGGGATGATCAAGCTTGGTGGGGGGAGGGGCGCCAACCATTACCAAAGCTTGAATAGGTGGTTTTCCCCTCACAGCGTAAACAAAGCCATGGGGAAGTTCCAGCTGAGCAGAGCCCTCCACAGCTCAGCAAAGCCTCTGTAGCCAGACTGCCTCTCTAGATTCCTCCTCTCTGGGCAGCGCATCTTTGAAAAAAGTGCAGATAAAACCCTCATCTCCCTGGGACAAAGCACGTGGGGGAAAGGGGTGGCTGTGGGCACAGCTTCAGCAGACTTAAACATTCCTGCCTGCCAGCTCTGAAGAGAGCAGCAGTTCTTCCAGCACAGCGCTTGAGCTCTGCTAAGGGACAGACTGCCTCCTCAAGTGGGTCCCTGACCCCCATGCCTCCTGACGGGGAGACACCTCCCAGCAGGGGTCCACAGACACCTCATACAGGAGAGCTCTGGCTGGCATCTGGTGGGTGCCCCTCTGGGACAAAGCTTCCAGAGGAAGGAACAGGCAGCAATCTTTGCTGTTCTGCAGCCTCCACCGGTGATACCCAGGCAGATATGGTCTGGAGTGGACCTCCAGCAAACTCCAGCAGACCTGCAGCCGAGGGGCCTCACTGTTAGAAGGAAAACTAACAGGAATATAATCAACATCAACAAAGGACATCCACACAGAAACCCCATCTGAAGGTTACCAGCATCAAAGACCAAAGGTAGATAAATTCACGAAGATGAGGAGAAACCAGTGCAAAAAGCCTGAAAATTCCAAAAACCAGAATGCCTCTTCTCCTCCAAAGGATCACAACTCCTTGCCGGCAAGGGAACAAAACTGGATAGAGAATGAGTTTGACAAATTGACAGAAGTAGGCTTCAGAAGGTGGGAAATAACAAACTCCTCTGAGCTAAAGGAGCATGTTCTAACCCAATGCAAGGAAGCTAAGAACCTTGAAAAAAGGTTAGAGGAATTGCTAACTAGAATAACCAGTTTAGAGAAGAACATAAATGACCTGATGGAGCTGAAAAACACAGCATGAGAACTTCGTGAAGCATACAGAAGAAAAACCTTCAGCCAGATTGAATGCTTTACAGGGAAGAATTCATACTGCAGAGCGGTCTTAACAATGTAAAGAATGTGCAAATGTCCTCAGACAAGATGCACACCTTGCTCATTAGTGAGTTCATTTCAGGCAGCCAGCTCTTCCTCACCCACTACATCACCAAGTCCTGTGGATATATCTGCTAAATATTTTTGGAATTTATCCACTTCTTTTGGTTCCCCAGTCCAAAACACAGTCATTTCACCTGGACTATTTCAATCATTACACAGGTGTCCAACCTTTTGTCTTCCCTGGGCCACATTGGAAGAAGAAAAATTGTCTTGTGCCACACATACAATACACTAACATTAACAATAGCTGATGAGCTAAGAAAAAAAAAAAGTCTGTGCATAGTTTTAGTGATACACCACCTCCGATAAGCAAAAAAGTCCTCACATTCAATGGGTTGCATACCCATGAATTCTAAAACTTCATCCTCTTTTGTCCCTTTCGAGTTAACATTACAGCCACAGTGACCTTTCAAAAATGCAAATTAAGTTACTCTTAAAACTCTAGTTAAAATACTTGATGTACATAAAGTGCTTAGCAAAATGACCAACTCATACTAAGTGCTTAGTAAATGTTAGATAAGTATTCTCCAGAATTGATGTAAATTATTTTTAAACAGTGCATTCTTGAAAGCAGTATGGCAGTCATAAAAATTTTGGAACCAAAACAGTATCTTTTTTTAAGCTAAAAAAAAAGTTTTAAATGGTGTCTTTCTATGTTGCCCAGGGTGGTCTCAAACTCCTGTGCTCAAGTGACCCTCCCACCTCATTCTCAAGTGGCTGCAATTACAGGCAACCAGCCTGACTTAAAACAGTATCTTAAGGTAGATGGTGATTAGCACATGTAGTATGCTTAACATTTAATATTATAATAAGACATCACAGCGGCTGTCTCATGATTAAGGCTGTGTTCCCTTGTTGGTGAGGAAATTAATTATGACTTGATAAATAGAACATGTTTTAAGAAGTGGCTATATAGCTCTGGATAAAACGAACAAAAGAATTAGAATTCCTGCGGGGAATATATACAAGACTTTATTTAGTCAAGTAAAAAAAAATCACTAATGTTTAACTGAAGAAAGAGAAATTGAATAATATAGTTCTATTTCAACATGTGGGTTCACAGATTTATTCTAACCTTCCAAGTAAAGTTGTTCCACTAGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196263-ZNF471:NM_020813:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact

Alternative protein isoforms

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.050
Domain overlap (PFAM):

C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.6)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Autistic and control brains