MmuINT1035736 @ mm10
Intron Retention
Gene
ENSMUSG00000055150 | Zfp78
Description
zinc finger protein 78 [Source:MGI Symbol;Acc:MGI:107783]
Coordinates
chr7:6375519-6381709:+
Coord C1 exon
chr7:6375519-6375614
Coord A exon
chr7:6375615-6378208
Coord C2 exon
chr7:6378209-6381709
Length
2594 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
TTTGTGTTTTACATTTTCAGGTG
3' ss Score
11.67
Exon sequences
Seq C1 exon
GAGCTTGCATTTCCAAACCATCTCTAATCTCCTTATTGGAACATGGGAAGGAGCCTTGGGAGGTGAAGGGTCAGGTGACAGGAAGCAGAGTACAAG
Seq A exon
GTGAGAAGTCAAGAAGCAGATTGAAAACCGTTTCTAGGGAATGGCTCTGCCATCTATCTTCAGAGGTCCTTACCTGGGCTGAGGCTGCCCAGAAACTCTTCCTAAGCCTTGCATCCCGGGTGTGAGCTGACGTTTCCTTGCTTGGCATGGATTCCTCCCTTCTACGTCCTGCTTGTGTCTTCTGCTTTCCTCTTGTCTCTGTAGTAAGTCATTGTATACAGAGGAGGATGTCCTGCTTCTGCTTCCATTGCTGGGATGAGGTGCCCTGACCAGAGTGGCCTTAAGGGGGACAATGTTTATTTCAGCTGCAGTTGCACATGGTAGTCCATCATTGTTGGGAATTCATATTGGCAGGACATTGAAACAGCTAGCCACAGAGCAGAGAGAGTGGAAGCATGCTTGCCTGCTATGAAGCTAGCTTTCTCTACTCATATACAATCCTGTTGTTTTAAAGACAAACATTCAATTTTACCAATGAAGACTCCAGCTGGATGCTGGGGTGACAGACAGTTTGCTAGCCCAGAGAGGCAGAGAAAACACCCAGCTGACCTTCCTATTCATTGATGCCCCAGAATGAAAAAGCCTCTTTCTCCTTCTCCATGTTGTCTTAAAAAATACCATTCTCGGGCTGGAGAGGTGGCTCAGTGGTTAAGAGCACTGGCTGCTTTTTCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACACCATCTGGAATGGGATCTAATGCCCTCTTCTGGTGTAGCTGGTGAAGACAGCTACAGTGTGCTCACATACATAAAATGAATAAATAAATCATTAAAAAAAATACCGTTCTCCTCATTGTCCCCTCCTTTCTGTTTACTTATGCTCACTCCCTGTTGGCTGGTTACTTGCTCCGCCTCCTGACTTAGGGTTGACTTTATTTAGCTCTTGGTTCAAAGGTGTGTGCTAGAGCTGAGTCACATTACAACAAGTTTTCCCAATTCACAATCTTGGAGTTCCCAATGTGATCAGATATTCTGCAACACTATCCAGGGCCCCAAAGCTGAGAATTCTGTGGCCTGTATTTAGGCTGGATCTTCCCACATCAATTCAGACAGTCAAGGTGATCCTCTGCAGACATGCTCAGGAGCCAATCTCAGCTCCATAGTCCTTTACTGAGACACCTGTTCCTAACCATCAGATAACAGCAAAACCCCATAATTTTTTTAAAGCAATCTTTTCTTAAGATCCATTCATTTATTTTATGTGTACGAGTGCTTGTTAGGTCTGCATGCATACCTGGTTGTGAGCCACTATGTGGTTGCTGGGAACTCAGAACCTCTGGAAGAGCAGACAATTGAGCCATCCCTCCAGCTTCTAAACCCCCATATTAAAAGGCCCGAAAAGTGATGCTCTTCCTATGTTGTTGAAAGTGAGAGAATGAAGAAAAACCCCTTACTATGAAACCTGAGTTGTGTGAGAAAGAGTTTGGTGTACTGAGACACAAACACATAAAGGTTTACTTAGGAGCACTGTTTTCTGATGATGAAATTCTATTCGCGCACTTGCCTTTAAATCCCAAGGGAAGTCATGAAGCATCGTGTGGTGTGTGTGCTTGCTGGGACTCTCTAGAGAGTTCCAAGAAGCAGTAGTAATGAAATATATTGGTAGTTAAACTAAGTGAGCTTAACTATATATACTAATTAATCAAAAGTAGGAAACAGGAGGCTGGAAAGCTACCTCAGTGGGTAAGACTTGGGTTCCATTCCCAGCACCCACATGGCAGCTCCCAACTGTCTGCCACTCCAGTTCCAGGAGAATCTTCTGGCCTCTGTAGGCACCAGGCATGTGCATGGTGCATAGACATACATGCAGACAAATCATCCACACATATTGAATGAGTAAATAAATAAATAAATAAATAAATATTTTTAAAGGTAGGAGACATTACAGAAGTGAATTTAATTTGTATTCTGGTCAAATCAGCATTATCATTACAAATGACTTCTAGGACCTCATCTTATTCTTCATTTACTTTGTCATTTCCCCATGTTGTTCTAGATCTCTTCCCTGATGCCATATTTGTTTCCATCGCATTTTAAAAGAGGAAGGGTTTTTGTTTCTGGCCCATGGTTTCAGAGGTTTACATCTATGGTCCACTGTCTCTGTTGCTTTTGGACTGGTGGCCATGAAGAAACATGGAGGAAGGGCATGGTGGAAGAAATCTATTTAGTCATGGCAGCCAGAAAGCAAATAGAAGCCTGCCCTTGCTACTGAATTTCCTCTTTCTTTTTCTTTTATTTCAATCTCCCAGTTCATTGGATAGTGACACTTCCAGGGAAAGTGTCACCTCCCTAGTTAATGGCTTTGGAAACAACCTCACGTCTACACCCATAGGTGTGCTTTGCACCTCTATGCAGTGAAGTTATCTAGTTTTTCATCCAATAGGGTCTAGATTATCACAAAGCTCTTATTCTCAGGGACATCCTTGCACATTTCCCAGTTGAAATACTTGTATGCAATTATATGGAGTTTATCAAATCGTTGAGGATTACTCCACTTGAAGTGCTGCTTTTGTTAGATGGCAGATGATAAAGAAGACTTTGTGTTTTACATTTTCAG
Seq C2 exon
GTGGTAAATCTGTACAGAAGACACACGAATTATCTCTCAGGCAGTTGGTGTTTGAGGATGTGGCAGTGGAGAACACTACAAGTCTTGGTTGTGAGTCTCTCACTTCTGGAAGGAAGCAGAAATGCAAAGACCTTCTGGATAGACAGATGAGTCAAGAAATATTTAACCTGAAAGAAACAGTCACTCACAAAGGAACCCACACTAAAGAAATAGGCTACAAACACACCGAATCCTTAAAATCTGCCCATCTGGATAGTGTAGAAGAGAATATTTATACTCACAAGTCAAATAAGAAAAGCTTCTCCAAAAATCCCAAGGTATGGAAATACAAGAAAATCTGGGCAGGGAAGACCATTTTTAAATGTAATGAATGTGAGAAAACCTTCACCCACAGCTCAGCTGTTACAGTTCACCAGAGAATTCACACGGGGGAGAAACCATATCAATGCACCGTCTGCGGAAAGGCCTTCAAGCAGAGCCACCACCTGGCTCAGCACCACACAACACACACCCACGAGAAACTCTTCCAGTGTGAGGAATGTAAGAAAGCCTTCAGCCAGAATTCATACCTCACTGTACACCGGAGAATTCACACCGGAGAAAAACCGTATAAATGTAAGGAGTGCGCAAAGTCCTTCAGGCAGCCTGCCCACCTGGCTCAGCACCACAGGATTCACACGGGTGAGAAACCTTACAAGTGTGAAATCTGTGGGAAAGCCTTTAACCACAGCATGTCACTCACTGGCCACCAAAGAGTACATTCTGGAGAGAAACCATATAAATGCAAGGACTGTGGGAAAGCTTTTCGGCAGAGTATACACCTTGTTGTTCACTCAAGAATTCATACTGGAGAAGAGCCCTATGAATGTAACGAATGTGGGAAGACCTTTAGGGAGAGTTCCCAGCTGACTATTCATCAGAGAAACCACACGGGAGAAAAACCTTTTGAATGTAAGCAGTGTGGTAAATTTTTCAATAGAAGTGCCTATCTTGCCAGACATCAGAAAATCCATACAGGAGAGAAACCTTATGAGTGTAATGAATGCGGCAAAACCTTCACACATGCTGCCTATCTTATAAGACACAAGAGGGTCCATACTGGAGAGAAGCCTTACAAATGTGCGGAATGTGGAAAGGCATTTGGTGATGGCTCCTCCCGTGCTCAGCATCAGAGACTTCACACTGGTCAGAGGCCCTATGTATGTGAGAAATGTGGAAGGGCCTTCAGAAGAAAGTCATCCCTTAATTGCCACCAAAGGTATCACACTGGAAAGAAACTGTAAAAATGTGTCCCCCATGGCAAACCCTTTAGCCGCCTACGAACCTGTAGCGTTCATCAGAGAATTTAGCTTTCAACCAGATTGTTCACTGTACTCTACATGGAAGATCTCACACAGGTCAAAGAGCTCTTAGGAATGTAAGGGATGGGGAGAAATCTTCAGTAAATGTTCCTAAACCACCCATCATTGGTGAGTTCTTGATGCAGTCATCTCAGGCATCCCTCCCTGTCCTCAGGTCCTGTGCATATACCTGCTAAGTATTTCCATTTAGGTTTGGCCCCTTAGCCTCCTGATCCAAAACACAATTGTTTTGCTTGGACTTTTTCAAATGTCTGTAATCCATCTTGTTTCCTTCAAGTTTATTACTCATTTATTTTACAGTCAGAAAATTTCTTTTTAAAAATATACATGTTATTTATGTAACTCTTCTAATACTCATTGTAAAATGTTTATTTAATGCACATAAAATGTTTAGCCACATGATTGACTGTATTAAGTTTGGATGGAGAACATCCCTTCAATGATTAGGAGACACATCAGCACAGAACACAGAGAGGCCACACACAGAGGCAAAGGAACATGAGGGGGTATCCCTGAGCCAATGCTTTATTGGGCCCAGGGTTACAGATTTCCTTTGTTGAGTCGCAACAAGCAGGCATGAGTTCTGGGAGGTCATCTCAGGTGTAGAAAGTGATCATTGCGACATATGTGCCCAGTCCATCTTCAGCAGTGCATTTAAAGGGAGCAGTGAAGGCAGGCAGCCCCCTTTGACGGGTTCTTGTTCTTGGCACCAGCTTGAGCCACTTGTGGATGGTGTGATACTAGGAAGTGTCAAAGGTGACTGACCTACACCTCCAGCCTGGGAAAGTTAAAACTTCAATGAAATAGATACCAAGAGAACATAAAATGAAAGGACTTCAATACACTGACCCATAGGGGTGCTTAGAAAATGTGTTAGACCAGAAAAATTATTTCTAAACCATGGCCTCTCAAATTTGGAACTTAGGTGATGACAACAATTTAGAAACTGAAAGTGTCTTCAGGTGGAACAATTAGTATGTGTAGTGTATTTAAGATGGAAGCTTTCTAATGATCCTAAAGGTTATGTTTTCTTATTGGTAAAGAAATTAAATCTGGTCTGGTACGTAGAATCTGTTTTAGGAAGTGCCTAGAAGTTAAAGACTGGAACAAAGAATTAGAATTTATTTGGGAAAAAATACACATGTGTATATATAGTCTAGGTCACAAAAGAAACATTCTTATATTTACTAACAAGCCCCCAGCAGGCCAGTCTAGCCGAAACAGGGAGCCCCAGGCTTACCATGAGATCCTATCTCAAAATGTAAGGTGGAGGGCGACAGACTCCCAACACCGACTAATGGTCTCCACACACACGCACATGGGCAATCAAGCCTACAAATGCATATATACAAATAAATAAATAAAAGTAAAATTTGAAAGGGTGATTGTGGCTGTGTTTGGAGGCACACACATCTCATTTCAGCACTCTGGAGGTAGAGACAGATGGGTCTCTGAGTTAGAGATCAGCCAGGTTTACAGAGTTCTAGGGCAGTCAGGGCTACATAGCGAGGCCTTGGATAAAAACAAACTGAAAGATCACATGCAAGATGAGTACACACTGCAGAAATAGGAAAACAGGGGACACAAACTTCCATTCTCGTTGTTCCAGAGGACTCTGGGTGGTTTTTGTAAAGTCCATCTCATGGTAGGTTCTGTTGGACTGTATGCCTGCCTTTCCTTGTTTATCCTAAGTTCATTCTCTTCCTCTACCCCCCACCCAATTTGTTATCAAATTGCCAGGGCTGGCGAGATGGCTCAGTGGTTAAGAGCGCTTGCTGGTTTTGCAGAGGACTTGGATTTGGGTCCCAGCACCCATATAGCAGCTCACAACTGTCTGTAACCCAACTTCCAGGGGATGCTCTTTTCTGGGCTCCACAAGAACTGTAGGCACGCAATGCACACAATACATGAAGACAAAACACTCATCCACATAAAATAAAAGCAAGTCTTTCAGGGGCTGGAGAGATGGCTCAGATGTTAAGAGCAGTCTGCTCTTCCCAAAATCCTGAGTTCAATTCCCAGCAACCATATGGTGGCTCACAACCATTTATCCTGGGATCTGATGCCCTCTTCTGGAAAGCGGATGTACATACAGATAGAGCATCATTTACATAAAATAATAAACCAACCTTTCAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055150:ENSMUST00000207347:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.227 A=NA C2=0.084
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=5.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types