RnoINT0168650 @ rn6
Intron Retention
Gene
ENSRNOG00000015322 | Zfp78
Description
zinc finger protein 78 [Source:RGD Symbol;Acc:1586242]
Coordinates
chr1:71184109-71187355:-
Coord C1 exon
chr1:71187260-71187355
Coord A exon
chr1:71184793-71187259
Coord C2 exon
chr1:71184109-71184792
Length
2467 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
CTTGTTTTACATTTTTTCAGGTG
3' ss Score
10.83
Exon sequences
Seq C1 exon
GAGCTTGCATTTCCAAACCATCTCTAATCTCTTTATTGGAGCATGGGAAGGAGCCTTGGGAGGTGAAGGGTCAGGTGACAAGAAGCCCGGTACAAG
Seq A exon
GTGAGAATTCAAGAAGCAGATTGAAAAACCTTTGTAAGGAATGGCTCCACCATCTTCAGAGGTCCTTACCTGGGCTGAAGCTGCCAGAAACTCTTCCTAAGCCTGAGGATCCTGGGTGTGAATTGAAGTTTCCTTGCCTGGCATGGATTCCCTTCTCTTCACGCTTGTCTCTTCTGCTTTCCTCTTGTCTTGGTAGTAAGTCACTTTGTACAAAGGAGAATGTCCTAGTTTCACTTTGGGTGCTGTGATGAAGCTCCCTGACAAAAGCAGCTTTAAAGGGGACAGTGTTTATTCTAGCTGTAGTTCCACATTGTAGTCCGTCATTGTGGGGAATTCATATAGGCACGACATTGAAACAGCTGGTCACAGACAGTGGAAGCATGCTTGCCTGCTACGAAGTTAGCTTTCTCTACTCAGATACAGTCCTGTTGTTTTCAAAGCAAACATCCTAGCCATTCCATTTTACCAATGAAGATTCCAACTGGCTGCTGGGGTGACAGTCTGCTAGCTCAGAGAGGCAGAAAAAGCACCCAGCTGACCTTCCTATTCACTGATGTCCCAGAACAAAAAAGCCTCTGTCTCCCCATGCTGTCTTAAAAAATACCCTTTTCCTCAGTGTCCCTCCTTTCTGTTTACTTATGTTCACTCCCTGTTGGCTGGTTACTTGCTTTGCCTCTTGACCTAGGGTTGACTTTATTTAGCTTTTGGATCAAAGGTGTGTGCTAGAGCTGAGCCATACTACAACAAGGTTTTCCCAGTTCACAATCTTGGAGTTGCCAATGTGATCAAATATCCTGCAACACAGAATGGTGCGGCCTCTATTCAGGCTGGATCTTCCCACATCAATTCAGTCAAGACGATCCCCTACAGACATGCTCACGATTCAATCTCAGCTCCATAGTCCTTCACTGAGACACCTTTTCCTAACCATCAGATAACAACAAAACCCCATATTTTTTTAAAAAGCAATCTTTTCTTAAGAGTCATTCATTTATTTTATGTATACAACATGCTATTTCTGCATGTCCACATGGTTGTGAGCCACCATGTGGTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGACAATTGAGCCATCTCTCCAGTCTCTAAACCCCCATATTAACTGGCCTGAAAAGTGACGCCTTTCCTACGTTGTTGAAAGTGAGAAAATGAATGAAAAAAATTCCTTGCTACGAAGCCTGAGTTCTATGAGAAATAAAGCGTTTGGTGTACTGAGACACTAACACATAAAGGGCTTACTTAAGAGCACTGTCTTCTGACTAGGGAATTATATTCACTCGCTTGCCTTTAAATCCCAAGGGAAGTCATAAAGCATAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCTGGAATCTCTTGAGAGTTCCGAGAAACAGTAGTAATTAATATATTGGCAGTTAAACTAAGTGAACTTAACTATATATACTAATTAATTAAAAGTAGGAAACAGGAGGCTGTGAAGTTACCTGAGTGGCTAAGACTTGGTTTCCATTCCAAGCACCCACATGGCAGCTTCCAATCTGTAACTCCAGATCTAGCAGAGTCTTCTGGCCTCTGAAGGCACCAGGCATCCAGAGGGTGCACAGAGATACATGCAGACAAATCATCCACACATATTGAATGAGTAAATAAATAGGTTTTAAAGGTAGGAAATATTATAGAAGTGAATTTAATTTGTATTCTGGCCAAATTAGCATTTTCATTACAGATGACTTCTAGGACCTTATCATAGTTTTCCTTGTCATTTCCCCATGTTGTTCTGTATCTCTTCCCTGCTGCCACAGTTGTTTCTAGCACAGCCTAAGGGGGGGTATTTTTTTGGCCCATGCTTTCAGAGTTTTACATCTATGGTCAGCTGGCTCTGTTGCTTTTGGACTGGTGGCCATGAAGAAGAATGGAGGAAGGGCATGGTGGAGGAAACCTATTTAGTCATGGCAGGCAGAAAGCAAATAGAAGCCTGGCTCTGCTATGGAATGTCCTCCTTCTTTTTCCTTTATTTCAATCTCTCAGTGCATTGGATAGTAACACCCATGTCCAGGGAAGGCGTTACCTTCCTAGTTAATGGCCTTGGGAACAACCTCACATATACACCCAGAAGTGTGCTTTCCTAGTCTCCTGTTCAGTTTTTCATCCAATAAAGTCAAGATTAATTAACACAAAGCTCTTATTCTCAGGCACATCCTTGCACCTTTTCCATTTGAATTACTTGCATGCGATTGTATGGAATTTATTAAATTGTTTAGAATTGCTTCACTTGAAGTGCTGCTTTTGTTAATAACACATGATAAAGAAGACTCCTTGTTTTACATTTTTTTTCTTATTTTTTTTTCAGAGCTGGGGACCGAACCCAGGGCCTTAGTCTTGTTAGGCAAGCGCTTTACCACTGAGCTAAATCTCCAACCCCCCTTGTTTTACATTTTTTCAG
Seq C2 exon
GTGGAGAATCTGTACAGAAGACACAAGAATTATCTCTGAGGCAATTGGCTTTTGATGCCGTGTCAGTGGAGAACATTGCAAGCCTCGGTTGTGAGTCTCCCACTTCTGGAAAAAAGCAGAAATGCAAAGACCTTTTTGATAGACAGAAGATGAGTCAGGAAATATTTAACCTGAAAGAAACAGTCACTCACAAAGGAACTCACACTAAAGAAATAGGCTACAAACACACGGAATCTTTCAAATCTGTCCATCTGGATAGTGTAGAAGAGAATATTTATAGTCACAAGACAAATAAGAAAAGCTTCTCCAAAAATCCCAAGGTACGGAAATACAAGAAAATCTGGGCAGGGAAGAACATTTTTAAATGTAACGAATGCGAGAAAACCTTCACCCACAGCTCATCTGTGACTGTGCATCAGAGAATTCACACGGGCGAAAAGCCGTATAAATGCACAGTCTGTGGAAAGGCCTTCAAGCAGAGCCACCACCTGGCTCAGCACCACACAACACACACCCACGAGAAACTCTTTGAGTGTAAGGAATGTAACAAAGCCTTCAGCCAGAATTCATACCTTATTGTGCACCAAAGAATCCACACCGGAGAAAAACCGTACAAGTGTAAGGAGTGTACGAAGTCCTTCAGGCAGCCCGCCCACCTGGCTCAGCATCAGAGGATTCACACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015322:ENSRNOT00000035184:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.303 A=NA C2=0.116
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=11.4),PF134651=zf-H2C2_2=WD(100=11.4),PF134651=zf-H2C2_2=WD(100=11.4),PF134651=zf-H2C2_2=PU(38.5=4.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]