HsaINT0187500 @ hg19
Intron Retention
Gene
ENSG00000197363 | ZNF517
Description
zinc finger protein 517 [Source:HGNC Symbol;Acc:27984]
Coordinates
chr8:146029026-146029623:+
Coord C1 exon
chr8:146029026-146029152
Coord A exon
chr8:146029153-146029509
Coord C2 exon
chr8:146029510-146029623
Length
357 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGG
5' ss Score
7.65
3' ss Seq
CTTTCCTTCTCTGAGCTTAGGCT
3' ss Score
5.1
Exon sequences
Seq C1 exon
GAGGCGGTTGTGTTCGAGGATGTGGCTGTGTACTTCACAAGGATAGAGTGGAGTTGCCTGGCCCCCGACCAGCAGGCACTCTACAGGGACGTGATGCTGGAGAACTATGGGAACCTGGCCTCACTAG
Seq A exon
GTGAGGGCTTCTGCCTTTGGTCCTGGGGCCGGGAGGTGCGTCTGTGTTAGCTTCAAAGGAAGTTGGTTCCATTGCAGATTCAAGGTCTGACACATTTTTGAGGGGAAGCTGGAGGCTCCCCAAGGAGCCCCTCTCTGCTTCCTGTTGGGCACCCACTGCCAGCGTCAGCCTGCCTGAGGCTTCTCTCCTGGGGCAGGCCCCCCATCTCCCCCTGGCCACCTAGCTGCCCCCTTCTGGGATAGTGAATGTTCCTGACCCACTCCAAGCACTCTGTGCCCTGATGGCCTCCAGCCAGGCACCTGGGCGTCCCTTCTCCCTCCTGTACTGATACGTGCTGCTTTCCTTCTCTGAGCTTAG
Seq C2 exon
GCTTTCTTGTTGCCAAACCAGCACTGATCTCCCTATTGGAGCAAGGAGAGGAGCCGGGGGCCTTGATTCTGCAGGTGGCTGAACAGAGCGTGGCCAAAGCCAGCCTGTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197363-ZNF517:NM_213605:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.026
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGTTGTGTTCGAGGATGT
R:
CTGTGCACAGGCTGGCTTT
Band lengths:
238-595
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)