HsaINT0187532 @ hg38
Intron Retention
Gene
ENSG00000189164 | ZNF527
Description
zinc finger protein 527 [Source:HGNC Symbol;Acc:HGNC:29385]
Coordinates
chr19:37380277-37385644:+
Coord C1 exon
chr19:37380277-37380372
Coord A exon
chr19:37380373-37384867
Coord C2 exon
chr19:37384868-37385644
Length
4495 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TGTTTTGTTTTTTGAGACAGGTT
3' ss Score
5
Exon sequences
Seq C1 exon
GACTCTCCATTTCTAAGCCCAACATGATCTCCTTACTGGAGCAAGGGAAGGAACCGTGGATGGTGGAGAGAAAGATGTCACAGGGTCACTGTGCAG
Seq A exon
GTGAGTGACAGATCACCAGGCAGGGAGGACTATTGTAAGGTACTCAACCAAGTAGTAAGTAGGAAACTGTTTTGAGCTTCAGGTGGGATGAGAACTGAAATCTCCATAGTATGTGCTTCCCTAGAAACCTCACCACACCCTGGGGTTTTTTCTTTTTCTTTCCATCAAATTATACTCTCCGGTCTTCCACCTATACCTTGAATCTCAATCCTTCTCAGCTCTTCTTTTCCTTTTATGGTTAGAATTGTATTACATTTCTAGATTTCTTTTTCAGAGTTTTTATTTTTATCAGAATTATCAAAGATATGTACACACAGTGTTTAAAGAATCAAGTAGTAGTATTAGGTTGGTGCAAAAATAATTGCAGTTTTGCCAAAAAACGCAATTACCTTTGCACCAAAAAGCCTATACAAGGCTTTTTCCCTTAAAGAAGGAATTCTTGTTCCCGGCTCCCCAGTTTCCCTCTTCCTAGAGCGATCCACTTTCTTTTCTTTTGTAGTTTATTTTGGTGTTCCCTTCATGTCTCCAAAAATATGTTAATGTTGCTACTCTTGATTTTTTTTCAGGGTGAGCCCTTATTCGGTATCTTCTTATAAGAAAATAAGGAGTTAGCACTTTCTTCTCCTGAATCCAACACATAAGGCACACACACAAATACACACATTTCCCATCCCCTATCTTATCAATGTCATCATTTTGATTAAGTCACTATTCAGCATTTATTTTATTATGGCCATTTAGTGCTAGTCATAGCTGTGCTGTGCATATGGCAAGTTACTTTTTCTCTACTCCTTTTTATTTTTCCTGGAGTTAATAATGACTTGGGAATTTTGTTTGTTTGTTTGTTTGTTTTTGCTCAGTTTATATATACATAACCCTAATCCAGTTCCCGACTTACCATCAATTGTCTGAGTCTTTCAAGATACTTGGACATATTAGGTGATCTATCCACTTCATCTTCTTGGAGAAATCTCTCCTGGAATCCTCAGATACGCTTCACTCTACACAAATGGCTCATTATATTTGCATGCACTCAATTTGGATCTATCTGATTTATCTGATATTTTCTCATAATTAGATTGAGGTAGTGCATTTTTGCAAAGAATGTCACAGAAATAATGTTGTATCTCTCTCAGTGCATCATTCCAAAGGATGTATAATATCGATATGTCTTATTATCGGTGATGTTAACTTTGCACACTTAGTGAAGGTAGTGTCTGCTTGGTTTCTCCATTATAAAGTTCTTATTTTTCTATTTGTAGTTAATAAATATCTTGGGGGAGATACTTTGAGATTATTCAGTTTCTTCTGTAATTTTTGCCCATTTATTTTAGCATTTATTGCTGGATCTCTTCAACTATTATTACTGTGGTATTAACCTAATGTTGATTTGTTCCATTTCCCTCTTTTCTTTGTGTATATTAATTGGGATTGTTCTGAAGGAAGAGCTGCTCTTTCTCCTCCATTTACTTATATATTCAATTATATTTATGGATTTTTTTCCTATGAGGTAAATCTAATTTACCTCATAAAATTTAATGACTTCATAAAATTTAAATGGATTTATTTTTGGATTTATGGATTTTTATTTCTATGAAGTAAATCCAATGAATCATTATGTTTCTCAAATCGTTCCAGCTTTGAATGTTGGAATCTCCTTCACATTGGTTCCTTTGACCTTCTGACATGCCCCCATGCATTTTTTGGGCACGTCCTTCCTTCTGGCACAAGGTATTCCAGGTTCTCTTATTTTCCTTGCCCCAGCCTTGAATCAACCACTTCTCCAAGGAGCCCTCATTGCTTTATTGGGAAATGGTGTTTAGAAACCAAGCTAGGTATGCTCTAGGCTACTGGGATATCACTCTTTCTGGCCCTGACAGCAGCTAAAGCTAGGAAACAGATAGATAGATAGGTAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATATTTACACACACACCCCTATATTTATTTCTGCCTCTTTTTTTCCCATTTTTTATTACCTCTATCTTTTTATATACTAAAACTATCAGTTTATATTAATAACTTGATTTCTAGTCCTGCTTTACAGGGTTTATTGTAGCCTTCCTCCTTGACTTATTTGTAATTTCTTTTTCTGATAATGAGAAAAAATATATTTACCTATTTGTTCAATTTTAGTATACACATAAAGTAGTTTCAGAATTTCTAACTTACTTCTCTGTGAGAAACAAATTTACCAACTAGATTTAGGTATTTGTATATAGTACTTTTTGTTTTAGTCTTATAGTGTCCAGTCAAAATACTATTTCCAAAATTACTTAGGTTGGTTATTTCAGGTCCATTTGTTACTGTTTTTGTTTGAGATGGAGTCTCGCTCTGTCACCAGGCTGGAGTGCAGTGGGCAATCTCGGCTCACTGCAAGCTCCGCCTCCCGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCGGGTAGCTGTGACTACAGGCGCATGCCACCACGCCTGGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGGCCAGGATGGTCTCAATCTCTTGACCTCGTGATCCGTGCCAGCCTTGGCCTCCCAAAGTGCTGGGATTACAGTTATGAGCCACCATGCCCGGCCGTATATACGTAGTTTTATAAGGAATTGCTACATTCCCCTCCAGAAAAGTTGTCTGCTTAGTTTTTTTCCTGCTGTAACAAATTAGCACACATTTAGTGGCTTAATCCAACACAAATTTATTGTAGCTCTGGAGGTCAGAAGTAAAAAGTAGGCCTTACAGAGCTAAAATCAAGATGTCAGCAGCCTATATTCCTTCCTAAAACTGTATGGGAGAATGCGTTTCCTTGATTTTTTATGCTTTTTTTTTGAGATGGAGCCTTGCTCTGTCACCCAGGCTGGAGTGCAATGGCACGATCTTGGCTCACTGCAACCTCTGCCTTCCAGGTACAAGGGATTTTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGTGCTCACCATCATGCCCAGATAATTTTTGTAATTTTAGTAGAGACAGGGTTTCGCCATGTTGGCCAGGTTGATCTCAAACTCCTGACCTCAGGTGATCCACCCTTCTTGGCCTCCCAATGTGCTGGGATTATACAGGTGTGAGCTACCACACCCAGCTGATTTTTTTTTTTTTTTTGAGACAGAGTTTTTCTCTTGTTGTCCAGGCTGGAGTGCAGTGGCGCAATCTTGGCTCACTGCAATCTCCACCTCCTGGGTTCAAGCGATTCTCCTGTATCAGCCTCCCAAGTAGCTGGGACTACAGGTGCGTACCACCACACCCAGTTAATTGTTGTATTTTTAGTAGAGACCGGGTTTCACCATATTGGCCAGGCTGGTCTCGAACTCCTGACCTTGTGATCCACCTGCTTCGGCCTCCCAAAGTGCTGGGAGTACAGGCATGAGCCACCGTGCCCAGCCTATTTTCCACTTTTTAAAATAACTTTAAGTGTAGGGCTTATATACAATACAGATTTGAGTTTTACTATATAAACCAATCTGATTTTCTTTTCATTTTAATAAGTGAAAGTCTAATTACATTTTTGGTAAATTTGGGCTTAATCCTATATATTGTCTTATGTTATATTTTCTGGGTTTTATAGTTTTTAAAAAGCACTTTCAGGCTGGGTGTGGTGGCTCATGCCTGTAATCCCAGCAGTCTGGGAGGCTGAGGTGGGTGGATCACGAGGTCAAGAATTCAAGACCAGCCTGGCCAACATGGTGCAACCCCGTCTCTACTAAAAATACAAAAATTAGCTGGGCGTGGTGGTGTGTTCCTGTAATCCCAGCTACTCAGAAGGCTGAGGTAGGAAAATTGCTTGAACCTGGGAGGTGGAGGTCGCAGTGAGCTGGGATCGCGCCACGGCACTTCAGCTTGGGCGACAGAGCAAGACTCCATCTCGGAAAAAAATTAAAAAGTAAAAATAAATAAATTAGCCTGACATGGTGCTGTGCACTTATTATTCCAACTACTTAGGAGACTGAGGTAGGAGGGTCACTTAAGCCTCGGAGGTCAAGGCTGCAATGAGCTGTGATAGTGCCACTGGACTCCAGCCTAGGCTAGGTGACAGAGCAAGACCCTGTCTCAAAAAAAAAAACAAAATGTGTACCTTGAAGTAAAATTGCTGGAACATGGAAGTGCATGTTTTAATTTACAAGATACTCAACTTGTTCTGGGAAGTGATTGTATCAGTTTATGCTCGTACTAACAATGACAGTGTCTGAGAATGGCATTTCCTTCCTCTCTTGATATTCTTCAACTTAAGCTTTTGATATTGTCCTTAATATTGTCTAAGTGAAATTTCTGCTGATATGAGGAAGGGAAATGCTGTTATGGTTTTAATTTACTAGTGATATTATTGAGCATCTTTCCAGGAATGCATTGTCTATAAAGTTTTTCTCTTCTGTGAATTACCTGCTCATACATTTTTTTGTTTTGTTTTTTGAGACAG
Seq C2 exon
GTTCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCATGATCTTGGCTCACTGCAGCCTATACCTACGGAACTCAAGCAATCTTCTCACCTCAGCATGCACACCACTGCACCTGGTTAATTTTTTTGTTTATTTTTCTTGTAGAGACGAGGTCTCACTGTGTTGCCCAGGCTGGTCTAGCACTCCTGGGCTCAAGCGATCCTCCCATCTTGGCATCCCAAACTGTTGGGATTACTGGCATACTTCCACTTTTGGAGAATTAGATTATTTTTCTTTTTCTTACTGATTTGTAGTAGAACTAAATTCTGGGCATTATTCATTTTTCTATGATATATGTTTTAGTTGTTTTTTCTCAGATTGTCCCTTGCCTTTTGACTTTGTGTTTTCTCCCGCACACAAGTTTTCAAGGTTAATGTCAAATTCATTCCTTTCAACCAGATGTCGTCAGGATGGTAGTGAGGAGGTCATGCTCCCCTTCACTGTGTTCTCTGTGTCTTGCAGGTTTTTAATGCTGTAAGTGTGTTTCTCTTGATATTTTTTTCATGACCTTTTCCACAATGATAGGGAATTTTACAAGTCAACCCTGGTTGAGTTCTTTCACAGAGATTTTGGTGGAAGAAAGGTATAAAATGCAAGGGCTTAGGTCCTATTATTGGTTTTGGAATGTTCTTTTTTTGTTCATAATTTTCTTTTATATTATTGATTACTTTTGTCCAAGTTTATTTAAAATAATTTTCTTAAGTTCTGAAATAAAATCCTTATGGAATTCTGGTTGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000189164:ENST00000483919:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=NA C2=0.288
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(2.6=11.1)
A:
NA
C2:
PF139001=GVQW=WD(100=80.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains