BtaINT0165674 @ bosTau6
Intron Retention
Gene
ENSBTAG00000039075 | ZNF527
Description
Bos taurus zinc finger protein 527 (ZNF527), mRNA. [Source:RefSeq mRNA;Acc:NM_001076914]
Coordinates
chr18:47588196-47594485:+
Coord C1 exon
chr18:47588196-47588291
Coord A exon
chr18:47588292-47592153
Coord C2 exon
chr18:47592154-47594485
Length
3862 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
GCTTTCTTGATATTTTTCAGACT
3' ss Score
8.21
Exon sequences
Seq C1 exon
GACTCTCCATTTCTAAGCCCAACATGATCTCCTTATTGGAACAAGGGAAGGAACCTTGGATGGTGGAGAGAGAGATGTCGGATGGTCAACATGCAG
Seq A exon
GTGAGTGACAGGACTGGGCAGGGAGGGCTGTTGTAAGGTGGCAGCCAATGTGGTCATGAAAAGACTGCCTTGAACTTGAGGTGGCTGCCCTGGGCATCAAGGGATTGTTCCTGCCCTATTTCTATCAAATTATACTCTCAAGGATGTGCGCATGTGTGCTAAGTCACTTCAGTCATGTCCGGCTCTTTGTGATCCTGTGGACTGTAGCCTGCCAGGCTCCTCTGTCCATGGGATTCTCCAAGCAAGACTTCTGGAGTGGGTTGACATGCCCTCCTCCAGTGGATCTTCCCGGCCCAGGAATCAAACCCACGTCTCTTGCATTTCAGGTGGATTCTTTACCACTGCGCCACTGGGGACACCCTACCTCTACCTAAACCTTGAATCTTCTTCCTTTACACTTCTTTCCCCTTTATGGACAGAATTATATTCATTTCTAAATTTCTTTTTTTTTTTCACTTCAAGATTTCTTTATAGAGTTTTTATCAAAGTTATATATGCACATTAGTTGAAGAGACAAGAATTCACATCTAAGTATCCAATTACATGCAGATTTTTTTCAATAAATACTATACAATTTAAGATTGGTTGAATCCATGGATGCCGAACTGCAGATTTGGAGGGCTGACTGTAAAATTATGCCCCTAGCCCCTGCATTGTTCATGGGTCAGCTGTACAGGAAATCACTCCATATTAGCTCCTAGAGAGCTTCTTCATTTTTCTAATGGCTGCAGAATACCCCATCATGTGGATATTATGGTAATTTATTCAGTATGTGGACATTTAGGATGTTTGCAGTAGTTTACAATTACAAACAATGCTGCAATAACTAACCTTGTACATACATATTTTCCTGTTGTTGAAGTGTTATGTTCAGGGTCATTTCTTAGATGTAAGATCACTAAGTAAGTGGATATGTAGTATTAGGAATTGCCAAATTCCTTCCCAAAAAAGTTGTACCAGTCTGCTTTCTGTATTAGTTTCTTATGGCTGCTGTAACAAATTACCATAAATTTGGTGGCTGAAAAAAAAACAGATTTATTTTATGTCTCTGGAGGTCAGAAGTTGAAAATGGATCTTGCAGGGCTAAAAACATTAGAAGCCTGCTTTCCTTCTGAAGGCCCTTGGGGAGAATCTGTTTCTTGCTTTTTTTATACTTTCTTTAGGGCCTTTACCCATCTTTTTATTTTCAACTGTGTAAAATCACTTTGATTTAAATGTGGGGTTTACAGGCAGTATATCAGTCTGGATCTCATTTCAATTTAATAAGTGAAAGTCCACCCACATTTTTTTATATGTTTAGGTTTAATTCTGTGTATTGTTGTATATTTTCTGATTTTTACAGTTTTTAAAAAAGACTTTCACTTGTCTGTTTTCCTAGCCTTTTTTTGGTCATGTAATACTGTAGTTTTTATAATAATTAGATTTTTCTTTTGATCTGGTGTTTCAACAGTGTTTAAAGAAAAACAGAAAGAGACCTTCATGTTTCTTTAAACAGTGTTTATTCCTTCTATTACTTGATTGATCAGCTTTAAAAATTAGCCTTTGATTTTTTTTTTTTTGCCTTTTACAGATGAAAAAGGTAAGCTATCCTTCCTTCCTAAAAGGCTTCCTTGATGGCTCAATTGGTAAAGAATCTGGCTGCAATGCAGGAGACCCTGGTTCAATTCCTGGGTTGGGAAGATCCACTGGAGAAGGGAATAGACTACCCACTCTAGTGTTCTTGGGGTTCCCTTGTGGCTCAGCTGGTAAAGAATCTGCCTGCAATGCGGGAGACCCTGGCTTGATCCCTGGGTTGGGAAGATGCCCTGGAGAAGGGAAAGGCTACCCACTCCAGTATTCTGGCCTGGAGAATTCCCTGGACTGTATAGCCCATGGGGTCGCAAAGAGTTGAACATGACTGAACGACTTTCACTTTACAGATGCGTCAAAAAGTAGCCTTATTATATTCCTCACCTTCTCTTCCCAAATTTTGTTAGTTGTATGGTTTTTACATTGTCCAGGCATATTATATTTACATGGTCTGGCGGCTCAGATGGTAAAGAATCTGCTGGCAGTGCAAAAGATCCAGGTTCAATCCCTGGGTCAGGAAGAACCCCTGAAGAAGGAAATGGCAAACCACTCCAGTATTCTTGCCTGGAGAATTCCATGGGCAGAGGTGCCTGGCAGATTACAGTCCATGGGGTCTCAAAGAGTCAAAGACGACTGAGCAACTAACACTTTGACTTTCTTTCACTTATTTTTTTGTCAAATTTATCCTAACTTTTTCTTTTGTTTTATTTCTGTAGCTAAATATATTTAGTGTTTTCCACTAGTTTCTTTTGTTGAAGTTTCTCTGGACATCTCTTGATTGACTGAGATCTGTTCTTTAGCAATTTCCTCAAAAAGTGTTCATGCAAATGATGTCCCCTAAGCTCTACCTTGTTCATAGTTGGCCGTTCTTTTCTTAAGTTTCTTATAGTGTATTGGTATTGAATGTTGTTACAAAGAATCCTGATGCCATCTTGATATTTTCTCTTCTGTGTAAGTACCTTTATATTTTGTTCTGATCTCTTAAAAGGTTCTTTTATTTTAAAGTCATTTTAGTGGGGCATGTTTCAGTCTTGACCATTTTGGGTCACTTTTTCCTAGTAGATATGTTCTCTTTCAGGATGGAGATTTGAGTTTTTATTTCAGGAAATATTTTTTTATTTTTATTGATGAATTAAAAAACATGAAAGTATAGAGAATAATATAATAATATAGTAAAGGGTTTCCTGCTGCTGCTGCTGCTAAGTCACTTCAGTCGTGTCCAACTCTGTGCAACCCCATAGACAGCAGCCCACCAGGCTCCCCCGTCCCTGGGATTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATTTCCTTCTCCAATGCAGGAAAGTGAAAAGTGAAAGTGAAGTCGTTCAGTTGTGTCCGACTCTTAGCGACCCCATGGACTGCAGCCTACCAGGCTCCTCTGTCCATGGGATTTTCCAGGCAAGAGTACTGGAGTGGGGTGCCATTGCCTTCTCCGAAGGGATTCCTACTGATGAGCAATTTATGTATTTCTCAGTTGCTTACTTGGTTACTTGGTGTATTATTCATTTAATATACTACCTGATTTAAGTTTTGATATTTAAGAATCTTGCCTTTTATCTGTGAGACTGGTCTGATACAAGAACAGTGAAATAGGTCAGTAGAACAATAAAGAAATTTCAAAAATACACCCATGTATATGTGAGAATTTGGTATTTGATAAAAATAGCCTTTCACATTAGTGGTACAAAAAGATTTTTGTAAAAGTTATGGATAATATTTGCATAATATTGGATTTTGGAAAAATCTTTCTTAAAATGACTGCAAAGCCAGACTCTATAATGAAAAGACTGGGAGATTTGAGTTCAAACTTTATCAGAAGCATTATAAATGAAGATGACATGTGACAATAAAAAGTGATGATTTGAGGGAGAAAAATACTTATAAAGCTATACCACCTTATTTATAATGACTTCTATAAACCACTTAAAAGAAGATGCCAGTATAATTAAAATGTATGCAAAAATATATAAAAGGTACAAAAATGTATATGAAAATGCTCAATTTTCAGAGACTTGCAAAATAACATAATAATGAGGTACTCTTTACTTGTAGGGGCAAAGGTTTTTAGAATGATGTTAGCCAGTGTGAATCAGTTTGAAGACATGTATTTCATGTTGCTGACAGGAATGTAAATTGATAAAAAAAAGTCAGAAGCACTACTTTCTCCTCTCTTTCCCTCAAGTAAATTCTTTAATTCCTTCTATAATGATTTTCTTTCTCCTTGTAAAGGTGAAAAGGAGACATTTGCTTTCTTGATATTTTTCAG
Seq C2 exon
ACTGGGAGTCTTGGTATGAGATCAAGGCATTATCTCCAAAGTGGTACACTGATGAAGAGGAAATATCACAGGGGGTGATAACAAAAAGACTTACAAGTTATAGCCTTGAATTCTCCAGTTTCAGAGAAGCCTGGAAATATGAGGCTGAATTTGAGCGGCATCAAGGAAATCAGGAGAGGCATTTCAGGCAAGTGGCAACTCTTAAGGAAATCTCTGCTGTGAAGAAAGACAGTGAATATAATAATTCTGAGAGAAACATTCTCTTGAAGTCAGTACTTTTAACACAACAGAGAGTTCCCCCTGTAGAGCAAGTACATAAATTTGGTATTTTTAACAAAATGTTCCCCCCAAATTCAGTTCTAATTGAACATAAAAGACTGCATGCCGAGAAGGAATCTTTGATAGGTAATGAATGTGAAGAATTCAACCAGAGCACATACCTTAGTAAAGATGTAGAAATTTCTCCTGGGGAGAAATCTTATGAAAGTAATGATTTTTCAAACCTCTTAAGTTTCCATTCATTACTTACTCAACATCAAGCAACTCATTTTGGAAAATCACCCCGTGGATATGATGAGTATGGCAATGCCTTTAGCTGTTACTCGTATTTTAGTCAACCTCAGAGAATTCATAATAGAGAGAAACCATATGCATGCAATGACTGTGGCAAGGGCTTCAGCCATGACTTTTTTCTCAGTGAGCATCAGAGAACTCATATTGGGGAGAAACCATATGAATGTAAGGAATGTAACAAAGCTTTCCGACAGAGTGCACACCTTGCTCAACATCAGAGAATCCACACTGGAGAGAAGCCCTTTGCATGCAATGAATGTGGGAAGGCCTTTAGCCGTTATGCCTTCCTTGTTGAACATCAGAGAATTCACACAGGAGAGAAACCATATGAATGTAAGGAATGTAACAAAGCCTTCAGACAGAGCGCACACCTTAATCAACATCAGAGAATTCACACTGGAGAGAAACCCTATGAATGTAATCAATGTGGAAAAGCCTTCAGTAGACGCATAGCCCTTACTCTGCATCAGAGAATTCATACAGGAGAGAAACCCTTTAAATGTAACGAATGTGGGAAGACCTTTGGCTATCGCTCACACCTTAATCAACATCAGAGAATTCACACCGGGGAAAAGCCCTATGAGTGCATCAAATGTGGGAAGTTTTTTAGGACTGACTCACAACTTAATCGACATCATAGAATTCATACTGGAGAGAGGCCTTTTGAATGCAATAAATGTGGGAAAGCATTCAGTGATGCTTTAGTTCTAATTCATCATAAAAGAAGTCATGCAGGAGAGAAACCCTATGAATGTAACAAATGTGGGAAGGCCTTCAGTTGTGGCTCATACCTTAATCAACATCAGAGAATTCATACTGGAGAGAAACCCTACGAATGTAATGAGTGTGGAAAGGCTTTCCATCAGGTCTTGTCCCTTAGGCTACACCAGAGAATTCATGCCGGAGAAAAACCCTATAACTGTAATGAATGTGGGAACAATTTTAGCCGTGCTTCAACCCTTAGACGACATCAGAAAATTCATAATAGAAAAATTCTCTGATTATGTGTAATAAGAAAACATGTAGTCACCACTTGGTCCTTATTAAATAAATATCAATGAATTCTTCAGTTAGTAATTCTACTAATATGAATGTAGTAAATATGGAAAAGTCTCCAGTTCACAAGCATCCCTTATTTTAAATAACCTGAGTAGTAGCCATCTATTACTTTTGGATCTGTCGTATGCTGCATTTGAGACTGAACCCATCCTCAGTACCTACCATTCTGATGAAATTATTTAATCAGGGAGAGTAGTGATCAATTATTTTCCTCAACCTAACTAGAAATGAGGGGTTTTCAGACGGCCCTGTCTAGACCAGTAGAGCCCTAGGAAGGTACGGTTATGGCTAATGAGAAAAGATCTTTTCTTTCCTCGCCCCCCCGCCCCCCACTGGAATTGCAAATGTCAAGGATTTGATAAAAACTCACCAGTAGCCTTTCTGTTACCACATAAAGCCTTCCCAAGATAAATCCAATACAAAGAAATTGGAGATAATAGAGAGAAATATGAGGATGTTGTTTGATCTGGATCCAGTCATGTCTGAAGCCTACACCATCTTTGACATGTTCATTTTTGTGATCTAATAAATTTTCTCTTTTTTTGCTTCAGTTAATTTGATTTGGAGTCCTGGTGTGTATATCCCATGTTTGCTACACATGTGAAAAAGCCTTAAATCTTTTATATGGCATAATTATTTATCCTGAGGAGAAACCTCATAACAAGTATATGAAAGTTAAATACACACTCTTCATAAAGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039075:ENSBTAT00000053874:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.121 A=NA C2=0.038
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF097235=Zn-ribbon_8=WD(100=8.4),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development