MmuINT0179489 @ mm10
Intron Retention
Gene
ENSMUSG00000030443 | Zfp583
Description
zinc finger protein 583 [Source:MGI Symbol;Acc:MGI:2682297]
Coordinates
chr7:6315660-6323742:-
Coord C1 exon
chr7:6323647-6323742
Coord A exon
chr7:6317780-6323646
Coord C2 exon
chr7:6315660-6317779
Length
5867 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
ATTTTCTTGGTATCTTTTAGATT
3' ss Score
9.85
Exon sequences
Seq C1 exon
GAATTCCTGTTTACAAACCAGCCGTGATCTCATTACTGGAACAAGGGAAAGACCCCTGGATGGTGCAGAAGAAGGGAGCAAGAGACACATGTCCTG
Seq A exon
GTGAGTGGGGATGCGCTAGGAGGTGGGCGCCTTTGGAGTAGCTTTTCTGAAAGCATCTGGTCTCCATAGCTCAGTGGTTCTCAGCCTTCCTAATGCTGCGGCCCTTTGTGTAGTTCCTCGTGTTGTAGTGACTCCAAACACAAAATTATTTTTGTTGTTACTTCATAACTGTGATTTTGCTACTGTTATGAATCTTAATGTAAATATCTGTGTTTTCCGACAGCCTTAGGCAATCCCTCTGGACGAGTAAGGGGTCACAACCCCCAGATTGAAAACCGCTGGTGTAGCGGGTGCTCTGTTGTGCCAAGCTTCTGGGTTAGAGTGAGTTATTAGATACACAGCCTGAGGCAGTAAAAGAAGAAAACAGCAGGCTGCAAAAAGACATTGGAGCATCAGGTCAGAAGCCAAAATCAGCAGGACCTCCTGATTGACATGGAGGGTTCCAAGCAAATCACCTCCTGCATTGACCTTCTGTTAGCCGCTTCCACCACAGTCGGCTTTCTATCATAGGGTAGGCAGTAGCTGCTTTGGGAAGGTGCCTGGGAATGCTCACCTCCGAGCTGTGTTCAAGGACACAGTGTTTTCTCTCCAGCAATTCTCTCTCCTGTTCTCAAGGACATGGTGTTCTACTTCTATAGGATTTATTTTTATTTTGTGTGTGAGTGAGTGTTTGGTCTGCATAGTATGTAAGTACACCACATGCAACATGTGCAGAGGCCAGAAGAAGGAGTCATGCCTGGACCTGGATTTACTGCCAGCTAAAAATCACTAGGTGCCGGGAACTGAACCTAGGGCCTTAGCAAGAGCTGCAAGCACACTTGCCTGCTGCGCCTTCTCTCCAGCACCGTGAATATGGTGTTCCTCTTGGAGGCTATTCAGGGTTGAGCTGGAAGGGACAGCCCATCCTGAGACAAGGGATCTTGGGGGACACTCTTAAGACATGCATGCTTGAGTCTGAAGTGAGTGGACTAACTACACATCTGGAATTAGCTTCTCAGTGGGTTTACACAGCACGTCACAAGTTTTTAAAGGACTCATTCATTCTTGTTATTCTGTGTGTGGGTGTTTTGCCTGCATGTATGTATGTGTACCATATGTGTGCAGTGCCCATAGAAGCCAGAAGAGGGCATTGGAACTAGTTACGCCTGGTTGTTAGATACCTCACATTTGCTTGAGGTTAAACCTAGTCCTGTGGAAGATCAGCACATGCTCTTAACTACTAAGCCATCTCCCCAACCCAGCACATGGCAATGTAAAGACGGAATGGAATATAACTGTAGCATCAGGCATGGGGAGAGATGCTGAGCATGAGCCCTGAATTGCTCTCTTGGTACACTTTATCTCAAAAGTTACTGTCCTGCCTGGCACTGGCGGCACATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGACGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAGAGTGAGTTTCAGGACAGCCAGGGTTACACAGAGAAACCCTATCTTGAAAAACCAAATCAGCTATTGGATGGATCACAGGGCCCCCAATGGAGGAGCAGGGAGGATCTGCAACCCTATAGGTGGAACAACAATATGAACTAATCAGTACCCCCCAGAGCTCGTGTCTCTAGCTGCATATGGATCGGAAGATGGCCTGGCCAGCCATCAGTAGAAAGAGAGGCCCATTGGTCGTGCAGACTTTATATACCTCAGTATAGGGGAACGCCAGGGCCAAGAGGTAGGAGTGGGTGGGTGGAGGAGTGGGTGTGGGAGGGTGTGGGGGACTTTTGGGATAGCATTGCAAATGTAAATGAAATAAATACCAAATAAATAAATAAGTACAAACCATCAGTGAAAAAAGAAAGCGCTTTCTAAGCTTATTTTCAAGTTTGGGTGATAACGTGAAATAGAAATAGTCAGAAGAACACGGGGTGGTAGGAGGAGAGATGAGCTCAGCTAGAGATCTAAAGAACCCCAGGCGTGTAACTCAATCAGCAGAGCGCTTGCCCTGCGTTGGTGAAATCCCGGGTTGATCACCAGCACTGCCTAAGCCTGCTGCCATGGTGGTGCACACCTGTCGTCCCAGCACTGGGGAAGCAGGGGCATGGCATTAAAGGCCATCCTCAGATACATAGTGAGCTCCGGGCCAGCCTGGACTATAGGAGATCCCGTCTTAGGGGGGAGAGAGAGAGAGACAGAGAGAGGGAGAGAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGAGAGAGACAGAGACAGAGACAGAGAGAAAGAGAGAGAGAGAGGAGAGGAGAGAGAGACAGAGAGGGAGAGGGAGAGAGAGAGGAGAGAGACAGAGACAGAGAGACAGAGAGAGAGGAGAGAGAGAGAAGAGAGAGAGGAGAGAGAGGGAGAGAGAGGAGAGAGAGAGGGAGAGAGAGACAGACAGAGACAGAGAGACGGAGAGAGAGAGAGAGAGAGGAGAGAGAGAGGGAGAGACAGACAGAGACAGAGAGAGGGAGGGAGGGAGAGAGAGAGAGAGGGAGGGGGAGGGAGAGAGAGAGAGATTGATTATGGGTATAGAATGCAGGGTATAGAAAGCAGACTGCAATTGAATGGGAAGACAGACCTGGAAAGTCTGATGTAGAGACAGACACTGACTGAATGGTACACATATCCTTAGAGGCTGCGAGGTAACCCCCCATACTGAGGCCTTGTGGGGAAGCAGAACTTTGAGAATTTTCTCGGCATCCTTTTTAGTAAATAGTCTCTATAGTTTCTTTGATTATGTTTTATGTGTATGTATTTGTCTTGTAGTTATTCTTTTCATTTATCAGATTTATATCCATGAACCTGAACAAAATAATCTCATAACTTTTTTATGTCTATGATAGTTTGTGGTTTTAATTTTCTATTGGGTATACTTACCATTTAGAAATGATGTATTAGGGCCCGGGCGGTGGTGGCGCCAGGGTAGCAAAGCATGCTCAGCTTGGCTGCCCACAGGTTCCTGGATCTGGGTTCTCGTTTCTGGGAGACAGTAACTTGGGCCTAGACTCCCAGACTGCCAGTTTGCAGCCTGTCGTGGGGTCAGCCTGGCTCTGGCTAACTCGGCCCTCTCAATAGCTTTCTTGTTGCATTGAGTTTTGGTCAGATTATTTTATTGTATTTGATCAGATGCCATTAATATTATAGACAGTAAGCCACATTCATTTAAATCATATGGTTTGAGGCATTTGACACAGGTTATTTTATACTAAGTTTTGACAGCATGCAATACCATTTGTAAGATTGCTTTAACTATTTCAGAATATTTGCATTTCATATAAATTTTAGAATGTAAATGAGAAATTTTATTCAAAGAGCTTCATTTGGGACTATGCTTATATATCAATTGAGAAAGAAATGACATTTAACCCTTTAAAATCCAACAACATGTTTTAATTTTCTCTACTTTGTCATAGGAATATTTTATAATGCCCAATCTAATAGTCTTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCTTTTTTCTTATTATCTTTTCTCTTTTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGGTATGCTAGACCAAGCTGGTCTCAAGCTCAGAGATCCTCTGCCTCTGCCTCTGCCTCCTGAGTGCTGGGAAAAGGCAAACCCCACTACCATGAGGCCTCGGTGTGGTATTCTTATTGCCTTTTGCACCTTTTTCCTGAAGCTCTGAGGACTTTTTATGTAATCATGTCATCTGCAGACATGGGCTGTTTTATTTGTCCTGTTTTTTTTTTAAACGTTTTATTTACTTTGTGTGTGCATATGTGTGCACAAGTATAGGCACACACATGACACAACATGTGTATGGAGGCCAAGGACAACCTCAGGAGTTGGTTCTTTCCTTCTACAGTGTGGGTTTTGGGGATCAGCCCCAGGTCATCAGGTTTAATGGGAAATCCCTTTATGCCCTCAGCCATCTTACAAGCCCTCTTGTTTTCATAATTAGTGGTCTTTATTGTCTAATTTCTGTTCATTGTAGCTACTTTATTTTCTCGCTTAATGTGGTGGTGGTTTGAGTATGTTTGGTCCAGGGTGTGGCACTATTAGGAGATGATGGAGTAGGTGTGGCCTTGCTGAAGGAAGTGTGTCATTATGGGCATGGCTTTAAGACCCTCATCCTAGTTGCCCAGAGATCAGTCTGCTCCTGGCTTCCTTTGGATGAAGATATAGAGCTCTCAGCTCCAGCCCTGTGCCTGCCTGGAAGCTGCCATGCTCCCACCTTGATGATGATGGGCTGAGCCTCTGAGCCTGTAAGCCAGCCCCAGTTAAACGTTGTCCTTGTGAGAGCTGCCTGGTCATGGTGTGAGCCCTGACTAAGACGTTTCCTACATCTACTAAGATGCTCTTCTACTTCCTGTGGGTTTATGTTGGCCTTGTCTTCTGAGGTAGCCCCTCAAGGATTTTCTGTTTGTTTTTGTTGTTGTTGTTGTTGTTATTGTGTAATTGTAAGCACTTTTAAATTTCAACTGTTCTTTAATTCTCAGATAGTACATGCCAGACACCATTATGTCTCTTAAAAGTAATTCTTTTGAGGGTAGAGAACATCCTTCTCTGATTTCAGTCAGTACTTTAAAATTTATTGACACATGTGTCTTACAATCCATGAAAAGCCCCGGCTTATTGAAGATACCATAAACCCCTATTGGGTAGTTGTTGAATATATTTATATTGGTATAGAGTAGGATATGGTAGTCAGTTTTGATGGGACTCAATATGCATTTACTAATTTTGGCCAAGATTTATCAGTTTCTAAGACCATGGTCTGAAAACACACAAAAAGGTAATGTTGGGCCACTGAGCTAGCCCATCAGGCAAAGACATTTATCACCAAGCCTGAGCTAGCCCATCAGGTAAAGACATTTATCACCAAGCCTGAGCTAGCCCATCAGGTAAAGACATTTATCACCAAGCCTGAGCTAGCCCATCAGGTAAAGACATTTATCACCAAGCCTGAGCTAGCCCATCAGGTAAAGACATTTATCACCAAGCCTGATGACCTGAGTTCTATACTCAGGTCTGACATGGTGGAAGGAGAGAGAGAGCCAGCTCCCATAAGTTGTCAGGAACACCTTTCCCAGAATGTAGTGATTAACCATAAAGTTTAATGACCCACTAGACAGCTGGTTTGCATTTAGGTCTGGGTATCCAGTGGGGGTACTTCAGCTACATTCTTGACATTCTAAAATTGCCTTTTAACTTGAGAGAGGAAGAGAAGATGTTTGAAGACTGTATTATTAACTCAGATATAAGATCTTAATTGTATCTAAATTTTAATTAGTTAATTAACTTTTAAAAAGATAATTGTGATTTTTTTTAGATGACGGCCTTAATTTTTTCATTTTCTCAATTATATTTCATGGTTATATATGATTAATTTAATCAACTTTCTTTTCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTTCTTCCTTCCTTCCTTCTACCTTTCTTTCTCTCTCTTTCTTTCACTATGTAGCTGTAGCTATTCTAGAACTCACTGTGTAGAGGCTGGACTCAAACTCACAGAGAAGGGCCCGCCTTTGCCTCTCAAGTACTGGGATTAAAGACGTGCGCCCCTGCACTTGGCTCAAGCACCTTTCCTCATATAATATAGTCTTTCAGATGCATTGAGATGTTAAATCTTTTCATTTCTTTTGTATTTTACTTTCTCTGAGCACTTTCTTTTCTTCTTATGAATGATTTTTAAAAACGTCTATTTTCTTGGTATCTTTTAG
Seq C2 exon
ATTGGCAGTATGTATTCAAAGGCACAGAATTTATATCAAAGCAAGATATTTATAAAGAATCTGCCAAAGTTCTAACAATGGGAAGAAGCCATTTTAGTTCCAGCCTTGACTGTCCCGATTTGAAAGAAGACCATGAAAATGAAGACTGGTTCAAAAACAGGTTGGGACGTCAGGAGGTGCATTCCCATCAATTGTTCATCACTCATAAAGAAGTCCCTGAAAGTGAAATTAGGGGGTGCAATCCATCTTGTCAAGCCGTCCATCAGAATGCAATACTAGATGTGCCACAATGTTCCTCTACCAAAGAAAGAATAGATCAGAGTGAGCCACAAAAGAGAAGTTACCGGAAAAAGTCTGTTGAAATGAAGCATAAGAAGGTCCAGGTAGAAAAGAGAATCCTGAAGTGTAGTGAATGTGAAAAAGTCTTTAACCAGACCTCATCCCTTACACTCCATCAGAGAATTCATACCGGAGAGAAACCCTACGCATGCGTCGAATGTGGGAAAGCCTTCAGCCAAAGCGCAAACCTAGCACAACATAAGAGAATACACACTGGGGAGAAGCCTTATGAATGTAAAGAGTGTAGGAAGGCCTTCAGCCAGAATGCACATCTTGCTCAGCATCAGAGAGTTCATACTGGAGAGAAACCTTACCAATGTAAAGAATGTAAAAAAGCCTTTAGCCAGATTGCACACCTGACTCAGCATCAAAGAATTCATACCGGAGAGCGACCTTTTGAATGTATTGAATGTGGAAAAGCATTTAGTAACGGTTCATTCCTGGCCCAGCATCAGAGAATCCATACGGGTGAGAAACCGTATGTGTGCCATGTGTGTGGGAAAGCTTTTAGTCACCGTGGATACCTAATTGTACATCAGAGAATTCATACTGGGGAGAGACCCTATGAATGTAAAGAATGTAGGAAGTCTTTCAGCCAGTATGCACACCTTTCTCAACATCAGAGAGTGCATACTGGAGAGAAACCGTATGAATGTAAAGTATGTAGGAAAGCGTTCAGCCAGGTTGCTTACCTTGATCAACATCAGAGGGTTCATACCGGAGAGAAACCCTATGAGTGTGCTGAATGTAGAAAGGCCTTCAGCAACAGTTCATCGCTTGCACAGCATCAGAGAAGTCACACAGGAGAGAAACCCTATATATGCAAGGAATGTAGGAAAACATTTAGCCAAAATGCAGGCCTTGCTCAACATCAAAGAATCCATACTGGAGAGAAACCTTACGAATGTAATATTTGTGGGAAAGCCTTTAGTTATAGTGGATCTCTTACCCTACATCAGAGAATTCATACCGGAGAGAGACCTTATGAATGTAAAGATTGCAGGAAATCGTTCAGGCAGCGTGCACATCTTGCTCATCATGAGAAAGTCCATACTATGGAGTCATTCTTGTCCCTTTCCTCTCCATCACCCTCTATGTCAAGTCAGTTGCCAAGAACTCTAGGCTTAATCTCTTAAATATGACCCAAACCTGACCCATTGGAACCATTTATTGTATCATCCTTGTCTTCTTTGTGTTACTCTGTTGTGTGTGGAAGAGTGAAATGTTTTTCTAGTGTTTTCACCCTTCACCCATGCCTCTTGTCAGTTTCCACACTTCAGCCAAACTTTACAAAAACGAATTTTGGTCATATTATTTATCCCTCATTAGTTGAAATTGCTTACCAATATCCAAGTTTGTAGGTAAAAAGCACAGTTCTTAAAGTACCCTAACAGGCCACCTGGCCCCCAGAACCTTGTTTCAAACTATCATTTAAAACCTTCATGTCAATATTCATCTCACTCTTGCTTTCTCTCACTCTACCTTCATATCAATATTCATCTCACTCTCTTGCGCTCTCTCTCTCTCTCTCTCTCTCTCTTTCAATACATACAGAACTAAAACAGATCTAGGTTTAATTGTTGCTCTTTCACCTTCCATTCCTGATTTTAGGAGAGCATCTGGTCCTTTGTAACATTCAGACCTATTTATACTATGGGGCTAATAATGGTTCTACCTCAAAAGTAATTGGGAGAAGAAAATAATGCATGTAGATTTCTTAGCAGAGTGCCTAGCATAAAGTAATATTAATCTAAAATAAAAATATGATGATATACCAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030443:ENSMUST00000062765:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.006 A=NA C2=0.124
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types